Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015731

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452506 .. 20455635

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCTGGAGAATCAGAGTTCCTGTTTCCCTGGATGGGTACAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACGCAGTTTTCACCAAAGACCTTTGCCCAGTCACAATTAGTGGTCTGGTTTCTCTCAAGATTGAGGATGCTACGCGGGCCTCGTATCTTCCTGAAAATCCTATGGCTACAGCTATTAGGTTTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATATTGAAGGAACTCGTCTCTAGATTCTACATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACATGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACACTTGTGAGTTTCTTCATTTCCCTTGATTGTGTTGAAGTGTTGCTTTGGATTATTTTTTCTTTGGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

5.84

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015731)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330661
rosa_multiflora	Rmu_sc0006444.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319760
rosa_rugosa	Rorug01G0090200
rosa_samantha	Rh1AG108300 Rh1AG109600 Rh1AG110700 Rh1CG104300 Rh1CG105600 Rh1DG111300 Rh1DG113500 Rh1DG114400
rosa_wichuraiana	Rw1G008600 Rw1G008850 Rw1G009010 Rw1G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AciI	CCGC	3 cut(s)	166, 236, 365
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	301, 557
AjnI	CCWGG	2 cut(s)	4, 29
AluBI	AGCT	4 cut(s)	76, 203, 361, 469
AluI	AGCT	4 cut(s)	76, 203, 361, 469
Alw26I	GTCTC	2 cut(s)	316, 459
AoxI	GGCC	2 cut(s)	168, 475
ApeKI	GCWGC	2 cut(s)	73, 398
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	85, 410
BccI	CCATC	2 cut(s)	28, 428
BciT130I	CCWGG	2 cut(s)	6, 31
BcoDI	GTCTC	2 cut(s)	316, 459
BfaI	CTAG	2 cut(s)	315, 377
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	74, 399
BlsI	GCNGC	2 cut(s)	75, 400
Bme1390I	CCNGG	2 cut(s)	6, 31
BmgT120I	GGNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	6, 31
BmrI	ACTGGG	2 cut(s)	113, 338
BmsI	GCATC	4 cut(s)	148, 420, 429, 438
BmuI	ACTGGG	2 cut(s)	113, 338
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	131, 355
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	119, 333, 513
BseBI	CCWGG	2 cut(s)	6, 31
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	39, 163
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	3 cut(s)	119, 333, 513
BseXI	GCAGC	2 cut(s)	85, 410
BsgI	GTGCAG	2 cut(s)	74, 417
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	170, 477
BshVI	ATCGAT	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	316, 459
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	170, 477
BspACI	CCGC	3 cut(s)	166, 236, 365
BspANI	GGCC	2 cut(s)	170, 477
BspCNI	CTCAG	1 cut(s)	469
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	119, 333, 513
BssECI	CCNNGG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	6, 31
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	39, 163
BstFNI	CGCG	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	316, 459
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 221, 373, 417, 426, 435
BstNI	CCWGG	2 cut(s)	6, 31
BstSCI	CCNGG	2 cut(s)	4, 29
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	85, 410
BstV2I	GAAGAC	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	170, 477
BsuTUI	ATCGAT	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	39, 163
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	62, 520
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	50, 226, 473
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	4, 29
EcoRV	GATATC	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	53, 229, 476
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	3 cut(s)	49, 225, 472
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	74, 399
FokI	GGATG	2 cut(s)	46, 170
Fsp4HI	GCNGC	2 cut(s)	74, 399
FspBI	CTAG	2 cut(s)	315, 377
GluI	GCNGC	2 cut(s)	74, 399
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	170, 477
Hin1II	CATG	3 cut(s)	53, 229, 476
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	11, 318, 452
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	16, 459
Hpy188III	TCNNGA	6 cut(s)	86, 148, 182, 269, 315, 446
HpyAV	CCTTC	2 cut(s)	295, 374
HpyCH4V	TGCA	2 cut(s)	55, 398
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 221, 373, 417, 426, 435
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	3 cut(s)	53, 229, 476
LguI	GCTCTTC	1 cut(s)	459
Lsp1109I	GCAGC	2 cut(s)	85, 410
LweI	GCATC	4 cut(s)	148, 420, 429, 438
MaeI	CTAG	2 cut(s)	315, 377
MaeIII	GTNAC	2 cut(s)	121, 261
MboII	GAAGA	4 cut(s)	170, 335, 476, 526
MfeI	CAATTG	1 cut(s)	42
MluCI	AATT	4 cut(s)	42, 126, 289, 441
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	148, 181, 330, 364, 499
MspR9I	CCNGG	2 cut(s)	6, 31
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	6, 31
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	6 cut(s)	167, 221, 373, 417, 426, 435
NlaIII	CATG	3 cut(s)	53, 229, 476
NmuCI	GTSAC	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	11, 318
PkrI	GCNGC	2 cut(s)	75, 400
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	4, 29
PspGI	CCWGG	2 cut(s)	4, 29
PspPI	GGNCC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	459
SatI	GCNGC	2 cut(s)	74, 399
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	6, 31
SetI	ASST	8 cut(s)	78, 114, 205, 212, 341, 363, 375, 471
SfaNI	GCATC	4 cut(s)	148, 420, 429, 438
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	146, 334
SmoI	CTYRAG	2 cut(s)	146, 334
Sse9I	AATT	4 cut(s)	42, 126, 289, 441
SsiI	CCGC	3 cut(s)	166, 236, 365
SspMI	CTAG	2 cut(s)	315, 377
StyD4I	CCNGG	2 cut(s)	4, 29
TaqI	TCGA	2 cut(s)	270, 432
TasI	AATT	4 cut(s)	42, 126, 289, 441
TfiI	GAWTC	2 cut(s)	11, 318
TscAI	CASTG	2 cut(s)	62, 520
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	73, 398
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	283, 526
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	62, 520
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	2 cut(s)	315, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.