Rw1G009040

Stomatin-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015731
Physical Location & Seq
Reverse (-)
19869009 .. 19871081
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009040.1

Sequence Viewer

Length: 735 bp
ATGAGTATGTTTAGGCGTAATTGCTTGAACGCTTTGAGATCTGTGAGACGTCTCAGCCATCTCCGATTTCGAAATTATGCAAGCTGCGGCTGTGTCGGAGATGCCCCCGCAAAATTTGGGTGTTCGGTTGTGGTCCCGAAAGACCATTTTTATGTGATTGAGCGTATTGATCAGTACTGGGAGACTCTCATGCCTGGAGAATCAGAGTTCCTGTCTCCCTGGATGGATACAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACGCAGTTTTCACCAACGACCTTTGCCCAGTCACAATTAGTGGTCTGGTTTCTCTCAAGATTGAGGATGCTACGCGGGCCTCGTATCTTCCTGAAAATCCTATGGCTAAAGCTATTAGGTTTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATATTGAACGAACTCTCCTGTAGATTCTACATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAAGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCGTCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACACGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACATTTGATATTGAAATGGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

244

Amino Acids

27.7

Weight (kDa)

6.99

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 719
AccII CGCG 1 cut(s) 355
AciI CCGC 5 cut(s) 87, 108, 355, 425, 554
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 49, 618
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 3 cut(s) 28, 490, 722
AjnI CCWGG 2 cut(s) 193, 218
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 5 cut(s) 84, 265, 392, 550, 658
AluI AGCT 5 cut(s) 84, 265, 392, 550, 658
Alw26I GTCTC 5 cut(s) 40, 56, 176, 219, 648
AoxI GGCC 2 cut(s) 357, 664
ApeKI GCWGC 3 cut(s) 84, 262, 587
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 133, 357
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 71, 274, 599
BccI CCATC 3 cut(s) 66, 217, 617
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 2 cut(s) 195, 220
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 5 cut(s) 40, 56, 176, 219, 648
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 719
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 38
BisI GCNGC 4 cut(s) 85, 88, 263, 588
BlsI GCNGC 4 cut(s) 86, 89, 264, 589
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 195, 220
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 357
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 195, 220
BmrI ACTGGG 3 cut(s) 187, 302, 527
BmsI GCATC 4 cut(s) 91, 337, 609, 618
BmuI ACTGGG 3 cut(s) 187, 302, 527
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 320, 544
BsaHI GRCGYC 2 cut(s) 49, 618
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bse1I ACTGG 4 cut(s) 182, 308, 522, 702
BseBI CCWGG 2 cut(s) 195, 220
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 2 cut(s) 228, 352
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 4 cut(s) 182, 308, 522, 702
BseXI GCAGC 3 cut(s) 71, 274, 599
BsgI GTGCAG 2 cut(s) 263, 606
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 359, 666
BslFI GGGAC 2 cut(s) 119, 721
BsmAI GTCTC 5 cut(s) 40, 56, 176, 219, 648
BsmBI CGTCTC 2 cut(s) 40, 56
BsmFI GGGAC 2 cut(s) 119, 721
BsnI GGCC 2 cut(s) 359, 666
Bsp119I TTCGAA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 38, 169
BspACI CCGC 5 cut(s) 87, 108, 355, 425, 554
BspANI GGCC 2 cut(s) 359, 666
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 719
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 70
BsrI ACTGG 4 cut(s) 182, 308, 522, 702
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 38, 169
BssNI GRCGYC 2 cut(s) 49, 618
Bst2UI CCWGG 2 cut(s) 195, 220
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 2 cut(s) 49, 618
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 82, 357
BstDEI CTNAG 2 cut(s) 53, 645
BstF5I GGATG 2 cut(s) 228, 352
BstFNI CGCG 1 cut(s) 355
BstKTI GATC 2 cut(s) 41, 172
BstMAI GTCTC 5 cut(s) 40, 56, 176, 219, 648
BstMBI GATC 2 cut(s) 38, 169
BstMWI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
BstNI CCWGG 2 cut(s) 195, 220
BstSCI CCNGG 2 cut(s) 193, 218
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 3 cut(s) 71, 274, 599
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 359, 666
BtsCI GGATG 2 cut(s) 228, 352
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 251, 709
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 82, 357
Cfr13I GGNCC 2 cut(s) 133, 357
CseI GACGC 1 cut(s) 607
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 190, 239, 415
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 2 cut(s) 40, 171
DpnII GATC 2 cut(s) 38, 169
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 193, 218
EcoRV GATATC 1 cut(s) 580
Esp3I CGTCTC 2 cut(s) 40, 56
FaeI CATG 3 cut(s) 193, 242, 418
FaqI GGGAC 2 cut(s) 119, 721
FatI CATG 3 cut(s) 189, 238, 414
FauI CCCGC 2 cut(s) 115, 348
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 85, 88, 263, 588
FokI GGATG 2 cut(s) 235, 359
Fsp4HI GCNGC 4 cut(s) 85, 88, 263, 588
FspBI CTAG 1 cut(s) 566
GluI GCNGC 4 cut(s) 85, 88, 263, 588
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 359, 666
HgaI GACGC 1 cut(s) 607
Hin1I GRCGYC 2 cut(s) 49, 618
Hin1II CATG 3 cut(s) 193, 242, 418
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 4 cut(s) 184, 200, 507, 641
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 65, 98, 205, 648
Hpy188III TCNNGA 6 cut(s) 136, 275, 337, 371, 458, 635
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 80, 244, 587
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 2 cut(s) 49, 618
Hsp92II CATG 3 cut(s) 193, 242, 418
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 38, 169
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 3 cut(s) 71, 274, 599
LweI GCATC 4 cut(s) 91, 337, 609, 618
MaeI CTAG 1 cut(s) 566
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 310, 450
MalI GATC 2 cut(s) 40, 171
MboI GATC 2 cut(s) 38, 169
MboII GAAGA 3 cut(s) 359, 524, 665
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 38
MluCI AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
MlyI GAGTC 2 cut(s) 178, 650
MmeI TCCRAC 2 cut(s) 76, 276
MnlI CCTC 5 cut(s) 337, 370, 519, 553, 688
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 195, 220
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 2 cut(s) 195, 220
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
NdeII GATC 2 cut(s) 38, 169
NlaIII CATG 3 cut(s) 193, 242, 418
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 2 cut(s) 200, 507
PkrI GCNGC 4 cut(s) 86, 89, 264, 589
PleI GAGTC 2 cut(s) 178, 649
PpsI GAGTC 2 cut(s) 178, 649
Psp6I CCWGG 2 cut(s) 193, 218
PspGI CCWGG 2 cut(s) 193, 218
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 357
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 648
SatI GCNGC 4 cut(s) 85, 88, 263, 588
Sau3AI GATC 2 cut(s) 38, 169
Sau96I GGNCC 2 cut(s) 133, 357
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 178, 650
ScrFI CCNGG 2 cut(s) 195, 220
SfaNI GCATC 4 cut(s) 91, 337, 609, 618
SfcI CTRYAG 1 cut(s) 502
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 335, 523
SmoI CTYRAG 2 cut(s) 335, 523
Sse9I AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
SsiI CCGC 5 cut(s) 87, 108, 355, 425, 554
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 193, 218
TaiI ACGT 1 cut(s) 52
TaqI TCGA 3 cut(s) 70, 459, 621
TasI AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 2 cut(s) 200, 507
TscAI CASTG 2 cut(s) 251, 709
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 84, 262, 587
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 251, 709
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 113
XspI CTAG 1 cut(s) 566
ZraI GACGTC 1 cut(s) 50
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.