Rh1AG109600

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015731
Physical Location & Seq
Reverse (-)
18964934 .. 18967702
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG109600.1

Sequence Viewer

Length: 804 bp
ATGTTGAGGCGTAATTGCTTGAACGCGTTGGGATCTGTGAGACGTCTCAGCCATCTCCGATTTCGAAATTATGCAAGCTGCGGCTGTGTCGGAGATGCCCCCGCAAAATTTGGGTGTTCGGTTGTGGTCCCGAAAGACCATTTGTATGTGATTGAGCGTATTGATCGGTACTGGGAGACTCGCATGCCTGGAGAATCAGTGTTCCTGTTGCCCTGGATGGATAAAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACACAGTTTTCACCAACGACCTTTGCCCAATCACAATTAGTGGTTTGATTTCTCTCAAGAATGTGGATGCTCTGCGGGCCTCGTATCTTCCTGAACATCCTATGGCTACAGCTATTAGGCGTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAACTTATATCTCGAAACACGATACATCAACAATTTCATATTGAAAGAACTCAACAGTAGATTCCTCATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACACATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACACGGCCTTTACCAAACCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACATTTGCATTGGATGGGTCAACTGGAAACCTTTTTCCTGGTGCTGTTGTTCCAACAGGAGATCTGAGAAAGGGGTCCCAGGTCAACCCAACACAAACAACCTACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

267

Amino Acids

29.96

Weight (kDa)

8.42

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 42 - 193 5e-06 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 46
AccII CGCG 1 cut(s) 26
AciI CCGC 5 cut(s) 81, 102, 349, 419, 548
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 22, 484
AjnI CCWGG 4 cut(s) 187, 212, 730, 771
AluBI AGCT 5 cut(s) 78, 259, 386, 544, 643
AluI AGCT 5 cut(s) 78, 259, 386, 544, 643
Alw26I GTCTC 4 cut(s) 34, 50, 170, 633
AlwI GGATC 1 cut(s) 40
AoxI GGCC 2 cut(s) 351, 649
ApeKI GCWGC 3 cut(s) 78, 256, 581
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 127, 351, 768
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 2 cut(s) 127, 768
BaeGI GKGCMC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 3 cut(s) 65, 268, 593
BccI CCATC 4 cut(s) 60, 211, 602, 701
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 4 cut(s) 189, 214, 732, 773
BcoDI GTCTC 4 cut(s) 34, 50, 170, 633
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 381
BglII AGATCT 1 cut(s) 754
BisI GCNGC 4 cut(s) 79, 82, 257, 582
BlsI GCNGC 4 cut(s) 80, 83, 258, 583
Bme1390I CCNGG 4 cut(s) 189, 214, 732, 773
Bme18I GGWCC 2 cut(s) 127, 768
BmgT120I GGNCC 3 cut(s) 127, 351, 768
BmiI GGNNCC 3 cut(s) 129, 769, 770
BmrFI CCNGG 4 cut(s) 189, 214, 732, 773
BmrI ACTGGG 2 cut(s) 181, 521
BmsI GCATC 3 cut(s) 85, 331, 612
BmuI ACTGGG 2 cut(s) 181, 521
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 314, 538
Bsa29I ATCGAT 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 212, 771
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 4 cut(s) 176, 516, 687, 721
BseBI CCWGG 4 cut(s) 189, 214, 732, 773
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 2 cut(s) 212, 771
BseGI GGATG 4 cut(s) 222, 346, 370, 712
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 3 cut(s) 61, 644, 749
BseNI ACTGG 4 cut(s) 176, 516, 687, 721
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 3 cut(s) 65, 268, 593
BsgI GTGCAG 2 cut(s) 257, 600
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 353, 651
BshVI ATCGAT 1 cut(s) 606
BslFI GGGAC 3 cut(s) 113, 706, 754
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 4 cut(s) 34, 50, 170, 633
BsmBI CGTCTC 2 cut(s) 34, 50
BsmFI GGGAC 3 cut(s) 113, 706, 754
BsnI GGCC 2 cut(s) 353, 651
Bsp119I TTCGAA 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 32, 163, 754
BspACI CCGC 5 cut(s) 81, 102, 349, 419, 548
BspANI GGCC 2 cut(s) 353, 651
BspCNI CTCAG 3 cut(s) 60, 643, 750
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 129, 769, 770
BspPI GGATC 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 64
BsrI ACTGG 4 cut(s) 176, 516, 687, 721
BssECI CCNNGG 2 cut(s) 212, 771
BssMI GATC 3 cut(s) 32, 163, 754
BssNI GRCGYC 1 cut(s) 43
Bst2UI CCWGG 4 cut(s) 189, 214, 732, 773
Bst4CI ACNGT 2 cut(s) 280, 497
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 4 cut(s) 76, 185, 351, 396
BstDEI CTNAG 3 cut(s) 47, 630, 758
BstF5I GGATG 4 cut(s) 222, 346, 370, 712
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 3 cut(s) 35, 166, 757
BstMAI GTCTC 4 cut(s) 34, 50, 170, 633
BstMBI GATC 3 cut(s) 32, 163, 754
BstMWI GCNNNNNNNGC 4 cut(s) 350, 404, 556, 609
BstNI CCWGG 4 cut(s) 189, 214, 732, 773
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 4 cut(s) 187, 212, 730, 771
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 65, 268, 593
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 32, 754
BstYI RGATCY 2 cut(s) 32, 754
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 2 cut(s) 353, 651
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 4 cut(s) 222, 346, 370, 712
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 204, 245, 694
Cac8I GCNNGC 4 cut(s) 76, 185, 351, 396
Cfr13I GGNCC 3 cut(s) 127, 351, 768
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 184, 233, 409
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 47, 630, 758
DpnI GATC 3 cut(s) 34, 165, 756
DpnII GATC 3 cut(s) 32, 163, 754
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 127, 768
Eco57I CTGAAG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 768
EcoRII CCWGG 4 cut(s) 187, 212, 730, 771
EcoRV GATATC 1 cut(s) 574
Esp3I CGTCTC 2 cut(s) 34, 50
FaeI CATG 3 cut(s) 187, 236, 412
FaqI GGGAC 3 cut(s) 113, 706, 754
FatI CATG 3 cut(s) 183, 232, 408
FauI CCCGC 2 cut(s) 109, 342
Fnu4HI GCNGC 4 cut(s) 79, 82, 257, 582
FokI GGATG 4 cut(s) 229, 353, 357, 719
Fsp4HI GCNGC 4 cut(s) 79, 82, 257, 582
FspBI CTAG 1 cut(s) 560
GluI GCNGC 4 cut(s) 79, 82, 257, 582
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 353, 651
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 3 cut(s) 187, 236, 412
HincII GTYRAC 2 cut(s) 714, 778
HindII GTYRAC 2 cut(s) 714, 778
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 178, 194, 501, 626
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 714, 778
Hpy188I TCNGA 4 cut(s) 59, 92, 633, 759
Hpy188III TCNNGA 6 cut(s) 130, 269, 331, 365, 452, 620
Hpy8I GTNNAC 2 cut(s) 714, 778
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 2 cut(s) 280, 497
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 74, 238, 581, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 404, 556, 609
HpyF3I CTNAG 3 cut(s) 47, 630, 758
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 3 cut(s) 187, 236, 412
KflI GGGWCCC 1 cut(s) 768
Kzo9I GATC 3 cut(s) 32, 163, 754
LguI GCTCTTC 1 cut(s) 633
Lsp1109I GCAGC 3 cut(s) 65, 268, 593
LweI GCATC 3 cut(s) 85, 331, 612
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 43
MalI GATC 3 cut(s) 34, 165, 756
MboI GATC 3 cut(s) 32, 163, 754
MboII GAAGA 3 cut(s) 353, 518, 650
MflI RGATCY 2 cut(s) 32, 754
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 615
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 2 cut(s) 172, 635
MmeI TCCRAC 3 cut(s) 70, 270, 770
MnlI CCTC 5 cut(s) 364, 513, 515, 547, 673
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 4 cut(s) 189, 214, 732, 773
MvaI CCWGG 4 cut(s) 189, 214, 732, 773
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 350, 404, 556, 609
NdeII GATC 3 cut(s) 32, 163, 754
NlaIII CATG 3 cut(s) 187, 236, 412
NlaIV GGNNCC 3 cut(s) 129, 769, 770
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 64
PaeI GCATGC 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 633
PfeI GAWTC 2 cut(s) 194, 501
PkrI GCNGC 4 cut(s) 80, 83, 258, 583
PleI GAGTC 2 cut(s) 172, 634
PpsI GAGTC 2 cut(s) 172, 634
PpuMI RGGWCCY 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 768
Psp6I CCWGG 4 cut(s) 187, 212, 730, 771
PspGI CCWGG 4 cut(s) 187, 212, 730, 771
PspN4I GGNNCC 3 cut(s) 129, 769, 770
PspPI GGNCC 3 cut(s) 127, 351, 768
PspPPI RGGWCCY 1 cut(s) 768
PsuI RGATCY 2 cut(s) 32, 754
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 633
SatI GCNGC 4 cut(s) 79, 82, 257, 582
Sau3AI GATC 3 cut(s) 32, 163, 754
Sau96I GGNCC 3 cut(s) 127, 351, 768
SchI GAGTC 2 cut(s) 172, 635
ScrFI CCNGG 4 cut(s) 189, 214, 732, 773
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 3 cut(s) 85, 331, 612
SfcI CTRYAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 2 cut(s) 127, 768
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 329, 517
SmoI CTYRAG 2 cut(s) 329, 517
SphI GCATGC 1 cut(s) 187
Sse9I AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 615
SsiI CCGC 5 cut(s) 81, 102, 349, 419, 548
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 187, 212, 730, 771
TaaI ACNGT 2 cut(s) 280, 497
TaiI ACGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 64, 453, 606
TasI AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 615
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 194, 501
TscAI CASTG 3 cut(s) 204, 245, 694
TseI GCWGC 3 cut(s) 78, 256, 581
TspDTI ATGAA 1 cut(s) 466
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 3 cut(s) 204, 245, 694
VpaK11BI GGWCC 2 cut(s) 127, 768
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 560
ZraI GACGTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.