Rroxscaffold_4G00319760

Stomatin-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015731
Physical Location & Seq
Forward (+)
47934637 .. 47937779
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319760.1

Sequence Viewer

Length: 735 bp
ATGAGCAGAATGAGTATGTTTAGGCGTAATTGCTTGGACGCGTTGAGATCTGTGAGACGTGTCAGCCATCTCCGATTTCGAAATTATGCAAGCTGCGGCTGTGTCGGAGATGCCCCCGCAAAATTTGGGTGTTCGGTTGTGGCCCCGAAAGACCATGCTTATGTGATTGAGCGTTTTGATCGGTACTGGGAGACTCTCATGCCTGGAGAATCAGTGTTCCTGTTTCCCTTGATGGATAAAATTGCTCATGTGCATTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACACAGTTTTCACCAGCGACCTTTGCCCAGTCACAATTAGTGGTCTGATTTCTCTCAAGATTGAGGATCCTTTTCGGGCCACGTATCTTCCTGAACATCCTATGGCTACAGCTATTAGGCGTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAGAGTGGCTTATGATAACTTATATCTCGAAACACGATACATCAACAATTTCATATTGAACCAACTCGACAATAGATTCCTCATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACACGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACATTTGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

244

Amino Acids

27.76

Weight (kDa)

8.66

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 47 - 203 2.7e-09 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 4 cut(s) 96, 117, 434, 563
AclWI GGATC 2 cut(s) 350, 363
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 526
AflIII ACRYGT 2 cut(s) 39, 58
AgsI TTSAA 1 cut(s) 499
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 5 cut(s) 93, 274, 401, 559, 667
AluI AGCT 5 cut(s) 93, 274, 401, 559, 667
Alw26I GTCTC 3 cut(s) 49, 185, 657
AlwI GGATC 2 cut(s) 350, 363
AoxI GGCC 3 cut(s) 141, 366, 673
ApeKI GCWGC 5 cut(s) 93, 271, 596, 725, 728
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 142, 366
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 415
BamHI GGATCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 5 cut(s) 80, 283, 608, 712, 715
BccI CCATC 3 cut(s) 75, 226, 626
BceAI ACGGC 1 cut(s) 688
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 49, 185, 657
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 396
BglII AGATCT 1 cut(s) 47
BisI GCNGC 6 cut(s) 94, 97, 272, 597, 726, 729
BlsI GCNGC 6 cut(s) 95, 98, 273, 598, 727, 730
Bme1390I CCNGG 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 142, 366
BmiI GGNNCC 2 cut(s) 144, 357
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 3 cut(s) 196, 311, 536
BmsI GCATC 4 cut(s) 100, 618, 627, 636
BmuI ACTGGG 3 cut(s) 196, 311, 536
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 329, 553
Bsa29I ATCGAT 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 4 cut(s) 191, 317, 531, 711
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 630
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 4 cut(s) 191, 317, 531, 711
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 5 cut(s) 80, 283, 608, 712, 715
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 143, 368, 675
BshVI ATCGAT 1 cut(s) 630
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 3 cut(s) 49, 185, 657
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 730
BsnI GGCC 3 cut(s) 143, 368, 675
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 3 cut(s) 47, 178, 355
BspACI CCGC 4 cut(s) 96, 117, 434, 563
BspANI GGCC 3 cut(s) 143, 368, 675
BspCNI CTCAG 1 cut(s) 667
BspDI ATCGAT 1 cut(s) 630
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 144, 357
BspPI GGATC 2 cut(s) 350, 363
BspQI GCTCTTC 1 cut(s) 657
BspT104I TTCGAA 1 cut(s) 79
BsrI ACTGG 4 cut(s) 191, 317, 531, 711
BssMI GATC 3 cut(s) 47, 178, 355
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 657
BstAPI GCANNNNNTGC 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 91, 411
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 3 cut(s) 50, 181, 358
BstMAI GTCTC 3 cut(s) 49, 185, 657
BstMBI GATC 3 cut(s) 47, 178, 355
BstMWI GCNNNNNNNGC 6 cut(s) 312, 419, 571, 615, 624, 633
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 5 cut(s) 80, 283, 608, 712, 715
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 2 cut(s) 47, 355
BstYI RGATCY 2 cut(s) 47, 355
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 3 cut(s) 143, 368, 675
BsuTUI ATCGAT 1 cut(s) 630
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 219, 718
Cac8I GCNNGC 2 cut(s) 91, 411
Cfr13I GGNCC 2 cut(s) 142, 366
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 155, 199, 248, 424
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 654
DpnI GATC 3 cut(s) 49, 180, 357
DpnII GATC 3 cut(s) 47, 178, 355
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Eco32I GATATC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 202
EcoRV GATATC 1 cut(s) 589
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 4 cut(s) 158, 202, 251, 427
FaqI GGGAC 1 cut(s) 730
FatI CATG 4 cut(s) 154, 198, 247, 423
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 6 cut(s) 94, 97, 272, 597, 726, 729
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 6 cut(s) 94, 97, 272, 597, 726, 729
FspBI CTAG 1 cut(s) 575
GluI GCNGC 6 cut(s) 94, 97, 272, 597, 726, 729
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 3 cut(s) 143, 368, 675
HgaI GACGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 158, 202, 251, 427
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 4 cut(s) 193, 209, 516, 650
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 4 cut(s) 74, 107, 336, 657
Hpy188III TCNNGA 5 cut(s) 284, 346, 380, 467, 644
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 58, 371
HpyCH4V TGCA 3 cut(s) 89, 253, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 312, 419, 571, 615, 624, 633
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 2 cut(s) 58, 371
Hsp92II CATG 4 cut(s) 158, 202, 251, 427
Kzo9I GATC 3 cut(s) 47, 178, 355
LguI GCTCTTC 1 cut(s) 657
Lsp1109I GCAGC 5 cut(s) 80, 283, 608, 712, 715
LweI GCATC 4 cut(s) 100, 618, 627, 636
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 58, 371
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 49, 180, 357
MboI GATC 3 cut(s) 47, 178, 355
MboII GAAGA 3 cut(s) 368, 533, 674
MflI RGATCY 2 cut(s) 47, 355
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 7 cut(s) 28, 82, 122, 240, 324, 487, 639
MluI ACGCGT 1 cut(s) 39
MlyI GAGTC 2 cut(s) 187, 659
MmeI TCCRAC 2 cut(s) 85, 285
MnlI CCTC 5 cut(s) 346, 528, 530, 562, 697
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 6 cut(s) 312, 419, 571, 615, 624, 633
NdeII GATC 3 cut(s) 47, 178, 355
NlaIII CATG 4 cut(s) 158, 202, 251, 427
NlaIV GGNNCC 2 cut(s) 144, 357
NmuCI GTSAC 1 cut(s) 319
NspV TTCGAA 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 209, 516
PkrI GCNGC 6 cut(s) 95, 98, 273, 598, 727, 730
PleI GAGTC 2 cut(s) 187, 658
PpsI GAGTC 2 cut(s) 187, 658
Ppu21I YACGTR 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 144, 357
PspPI GGNCC 2 cut(s) 142, 366
PsuI RGATCY 2 cut(s) 47, 355
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 657
SatI GCNGC 6 cut(s) 94, 97, 272, 597, 726, 729
Sau3AI GATC 3 cut(s) 47, 178, 355
Sau96I GGNCC 2 cut(s) 142, 366
SchI GAGTC 2 cut(s) 187, 659
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 4 cut(s) 100, 618, 627, 636
SfcI CTRYAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 344, 532
SmoI CTYRAG 2 cut(s) 344, 532
Sse9I AATT 7 cut(s) 28, 82, 122, 240, 324, 487, 639
SsiI CCGC 4 cut(s) 96, 117, 434, 563
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 61, 374
TaqI TCGA 4 cut(s) 79, 468, 507, 630
TasI AATT 7 cut(s) 28, 82, 122, 240, 324, 487, 639
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 209, 516
TscAI CASTG 2 cut(s) 219, 718
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 5 cut(s) 93, 271, 596, 725, 728
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 481
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 2 cut(s) 219, 718
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.