Rw1G008850

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015731
Physical Location & Seq
Reverse (-)
19502282 .. 19505076
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008850.1

Sequence Viewer

Length: 726 bp
ATGAGTATGTTGAGGCGTAATTGCTTGAACGCGTTGGGATCTGTGAGACGCCTCAGCCATCTCCGATTTCGAAATTATGCAAGCCGCGGCTGTGTCGGAGATGCCCCCGCAAAATTTTGGTGTTCGGTTGTGGCCCCGAAAGACCATGCTTATGTGATTGAGCTTATTGATCAGTACTGGGAGACTCTCATGCCTGGAGAATCAGAGTTCCTGTTTCCCTGGATGGGTACAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACGCAGTTTTCACCAACGACCTTTGCCCAGTCACAATTAGTGGTCTGATTTCTCTCAAGATTGTGAATGCTACGCGGGCCTCGTATCTTCCTGAACATCCTATGGCTACAGCTATTAGGTTTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATATTGAACGAACTCGCCTCTAGATTCTACATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACATGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACACTTGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

241

Amino Acids

27.13

Weight (kDa)

8.5

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 32, 87, 355
AciI CCGC 6 cut(s) 85, 87, 108, 355, 425, 554
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 176, 229
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 28, 490
AjnI CCWGG 2 cut(s) 193, 218
AluBI AGCT 5 cut(s) 163, 265, 392, 550, 658
AluI AGCT 5 cut(s) 163, 265, 392, 550, 658
Alw26I GTCTC 3 cut(s) 40, 176, 648
AlwI GGATC 1 cut(s) 46
AoxI GGCC 3 cut(s) 132, 357, 664
ApeKI GCWGC 4 cut(s) 262, 587, 716, 719
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 133, 357
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 524
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 274, 599, 703, 706
BccI CCATC 3 cut(s) 66, 217, 617
BciT130I CCWGG 2 cut(s) 195, 220
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 40, 176, 648
BfaI CTAG 2 cut(s) 504, 566
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 6 cut(s) 85, 88, 263, 588, 717, 720
BlsI GCNGC 6 cut(s) 86, 89, 264, 589, 718, 721
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 195, 220
BmgT120I GGNCC 2 cut(s) 133, 357
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 195, 220
BmrI ACTGGG 3 cut(s) 187, 302, 527
BmsI GCATC 4 cut(s) 91, 609, 618, 627
BmuI ACTGGG 3 cut(s) 187, 302, 527
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 320, 544
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 85, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 182, 308, 522, 702
BseBI CCWGG 2 cut(s) 195, 220
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 85, 218
BseGI GGATG 2 cut(s) 228, 376
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 4 cut(s) 182, 308, 522, 702
BseXI GCAGC 4 cut(s) 274, 599, 703, 706
BsgI GTGCAG 2 cut(s) 263, 606
Bsh1236I CGCG 3 cut(s) 32, 87, 355
BshFI GGCC 3 cut(s) 134, 359, 666
BshVI ATCGAT 1 cut(s) 621
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 3 cut(s) 40, 176, 648
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 3 cut(s) 134, 359, 666
Bsp119I TTCGAA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 38, 169
BspACI CCGC 6 cut(s) 85, 87, 108, 355, 425, 554
BspANI GGCC 3 cut(s) 134, 359, 666
BspCNI CTCAG 2 cut(s) 66, 658
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 3 cut(s) 32, 87, 355
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 70
BsrI ACTGG 4 cut(s) 182, 308, 522, 702
BssECI CCNNGG 2 cut(s) 85, 218
BssMI GATC 2 cut(s) 38, 169
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 195, 220
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 82, 357
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 228, 376
BstFNI CGCG 3 cut(s) 32, 87, 355
BstKTI GATC 2 cut(s) 41, 172
BstMAI GTCTC 3 cut(s) 40, 176, 648
BstMBI GATC 2 cut(s) 38, 169
BstMWI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
BstNI CCWGG 2 cut(s) 195, 220
BstSCI CCNGG 2 cut(s) 193, 218
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 3 cut(s) 32, 87, 355
BstV1I GCAGC 4 cut(s) 274, 599, 703, 706
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 3 cut(s) 134, 359, 666
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 228, 376
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 251, 709
Cac8I GCNNGC 2 cut(s) 82, 357
Cfr13I GGNCC 2 cut(s) 133, 357
Cfr42I CCGCGG 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 175, 228
CviAII CATG 5 cut(s) 146, 190, 239, 415, 662
CviQI GTAC 2 cut(s) 175, 228
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 2 cut(s) 40, 171
DpnII GATC 2 cut(s) 38, 169
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco32I GATATC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 193, 218
EcoRV GATATC 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 5 cut(s) 149, 193, 242, 418, 665
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 145, 189, 238, 414, 661
FauI CCCGC 2 cut(s) 115, 348
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 6 cut(s) 85, 88, 263, 588, 717, 720
FokI GGATG 2 cut(s) 235, 363
Fsp4HI GCNGC 6 cut(s) 85, 88, 263, 588, 717, 720
FspBI CTAG 2 cut(s) 504, 566
GluI GCNGC 6 cut(s) 85, 88, 263, 588, 717, 720
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 134, 359, 666
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 5 cut(s) 149, 193, 242, 418, 665
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 4 cut(s) 184, 200, 507, 641
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 5 cut(s) 65, 98, 205, 327, 648
Hpy188III TCNNGA 6 cut(s) 275, 337, 371, 458, 504, 635
HpyAV CCTTC 1 cut(s) 563
HpyCH4V TGCA 3 cut(s) 80, 244, 587
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
HpyF3I CTNAG 2 cut(s) 53, 645
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 5 cut(s) 149, 193, 242, 418, 665
Ksp22I TGATCA 1 cut(s) 169
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 38, 169
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 4 cut(s) 274, 599, 703, 706
LweI GCATC 4 cut(s) 91, 609, 618, 627
MaeI CTAG 2 cut(s) 504, 566
MaeIII GTNAC 2 cut(s) 310, 450
MalI GATC 2 cut(s) 40, 171
MboI GATC 2 cut(s) 38, 169
MboII GAAGA 3 cut(s) 359, 524, 665
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 38
MluCI AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
MluI ACGCGT 1 cut(s) 30
MlyI GAGTC 2 cut(s) 178, 650
MmeI TCCRAC 2 cut(s) 76, 276
MnlI CCTC 7 cut(s) 6, 62, 370, 511, 519, 553, 688
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 195, 220
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 2 cut(s) 195, 220
MvnI CGCG 3 cut(s) 32, 87, 355
MwoI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
NdeII GATC 2 cut(s) 38, 169
NlaIII CATG 5 cut(s) 149, 193, 242, 418, 665
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 200, 507
PkrI GCNGC 6 cut(s) 86, 89, 264, 589, 718, 721
PleI GAGTC 2 cut(s) 178, 649
PpsI GAGTC 2 cut(s) 178, 649
Psp6I CCWGG 2 cut(s) 193, 218
PspGI CCWGG 2 cut(s) 193, 218
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 357
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 176, 229
RsaNI GTAC 2 cut(s) 175, 228
RseI CAYNNNNRTG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 648
SatI GCNGC 6 cut(s) 85, 88, 263, 588, 717, 720
Sau3AI GATC 2 cut(s) 38, 169
Sau96I GGNCC 2 cut(s) 133, 357
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 178, 650
ScrFI CCNGG 2 cut(s) 195, 220
SetI ASST 9 cut(s) 165, 267, 303, 394, 401, 530, 552, 564, 660
SfaNI GCATC 4 cut(s) 91, 609, 618, 627
SfcI CTRYAG 1 cut(s) 387
Sfr303I CCGCGG 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 335, 523
SmoI CTYRAG 2 cut(s) 335, 523
Sse9I AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
SsiI CCGC 6 cut(s) 85, 87, 108, 355, 425, 554
SspMI CTAG 2 cut(s) 504, 566
StyD4I CCNGG 2 cut(s) 193, 218
TaqI TCGA 3 cut(s) 70, 459, 621
TasI AATT 7 cut(s) 19, 73, 113, 231, 315, 478, 630
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 87, 90
TfiI GAWTC 2 cut(s) 200, 507
TscAI CASTG 2 cut(s) 251, 709
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 4 cut(s) 262, 587, 716, 719
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 251, 709
XapI RAATTY 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 503
XspI CTAG 2 cut(s) 504, 566
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.