Rorug01G0090200

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015731
Physical Location & Seq
Reverse (-)
14676169 .. 14679040
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0090200.1

Sequence Viewer

Length: 930 bp
ATGAATCACCCATTTGAAATTGAAATTGAATTCCTTAGAGTAATGAAATTGGTTGATCTCAATGTTCCTTTGGATGACGACTGTAAGATCACCAATGACACTAGAATCCGAGCAGCTGTCCCCACCATCAAGTACTTGCTCGGAAATGGTGCCAGAGTCATCCTCGCTTCCCACTTGGGACGTCCCAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGTGCCAAGACTGTCTGAACTTCTTGGCATTCAGGCTGAAGACTCTATTGGTCCAGAAGTAGAAAAGCTGGCGGCTTCACTTCCTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGGTTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGAACTCGACTATCTTGTTGGGGCAGTATCAAACCCAAAAAAGCCATTTGCAGCCATTGATGGTGGTCCGAAGGTCTCATCCAAGATTGGAGTGATCGAGTCACTGTTAGAGAAGGTTGATTACTTAATTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACCCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAGCAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGCTGGATGGGATTGGATATTGGACCAGACTCTATTAAGACATTCAATGATGCACTTGATACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAGGAACAGAGGTAAGCAGTTGGCATTCATTTCTGTACATAAACATGTTCACTACTTATATAGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

309

Amino Acids

33.54

Weight (kDa)

5.27

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 12 - 137 1.6e-41 Phosphoglycerate kinase
PGK PF00162 129 - 290 8e-59 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 816
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 2 cut(s) 29, 686
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 3 cut(s) 134, 206, 896
AfiI CCNNNNNNNGG 2 cut(s) 311, 816
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 7 cut(s) 17, 23, 29, 214, 329, 726, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 5 cut(s) 116, 289, 385, 601, 722
AluI AGCT 5 cut(s) 116, 289, 385, 601, 722
Alw26I GTCTC 2 cut(s) 472, 654
AlwI GGATC 1 cut(s) 359
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 3 cut(s) 113, 443, 705
ApoI RAATTY 2 cut(s) 29, 686
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
AspS9I GGNCC 4 cut(s) 272, 458, 761, 824
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 4 cut(s) 272, 458, 761, 824
BanI GGYRCC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 125, 455, 717
BccI CCATC 6 cut(s) 134, 302, 446, 731, 739, 818
BcoDI GTCTC 2 cut(s) 472, 654
BfaI CTAG 2 cut(s) 102, 602
BisI GCNGC 4 cut(s) 114, 294, 444, 706
BlsI GCNGC 4 cut(s) 115, 295, 445, 707
BmcAI AGTACT 1 cut(s) 134
Bme18I GGWCC 4 cut(s) 272, 458, 761, 824
BmgT120I GGNCC 4 cut(s) 272, 458, 761, 824
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 3 cut(s) 688, 738, 778
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 2 cut(s) 186, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 816
Bse3DI GCAATG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 186, 633
BseGI GGATG 5 cut(s) 79, 159, 470, 729, 750
BseLI CCNNNNNNNGG 2 cut(s) 311, 816
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 2 cut(s) 360, 582
BseRI GAGGAG 2 cut(s) 365, 368
BseXI GCAGC 3 cut(s) 125, 455, 717
BshFI GGCC 1 cut(s) 632
BshNI GGYRCC 1 cut(s) 149
BslFI GGGAC 3 cut(s) 104, 168, 192
BslI CCNNNNNNNGG 2 cut(s) 311, 816
BsmAI GTCTC 2 cut(s) 472, 654
BsmFI GGGAC 3 cut(s) 104, 168, 192
BsmI GAATGC 2 cut(s) 249, 883
BsnI GGCC 1 cut(s) 632
Bso31I GGTCTC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 5 cut(s) 55, 87, 364, 486, 537
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 2 cut(s) 361, 581
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 894
BssECI CCNNGG 2 cut(s) 186, 633
BssMI GATC 5 cut(s) 55, 87, 364, 486, 537
BssNI GRCGYC 1 cut(s) 181
BssT1I CCWWGG 2 cut(s) 186, 633
Bst4CI ACNGT 4 cut(s) 83, 209, 234, 498
BstACI GRCGYC 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 894
BstC8I GCNNGC 4 cut(s) 291, 375, 387, 703
BstDEI CTNAG 4 cut(s) 35, 369, 568, 927
BstF5I GGATG 5 cut(s) 79, 159, 470, 729, 750
BstKTI GATC 5 cut(s) 58, 90, 367, 489, 540
BstMAI GTCTC 2 cut(s) 472, 654
BstMBI GATC 5 cut(s) 55, 87, 364, 486, 537
BstMWI GCNNNNNNNGC 2 cut(s) 223, 698
BstNSI RCATGY 2 cut(s) 377, 907
BstV1I GCAGC 3 cut(s) 125, 455, 717
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 632
BtsCI GGATG 5 cut(s) 79, 159, 470, 729, 750
BtsIMutI CAGTG 3 cut(s) 494, 576, 663
Cac8I GCNNGC 4 cut(s) 291, 375, 387, 703
Cfr13I GGNCC 4 cut(s) 272, 458, 761, 824
Csp6I GTAC 3 cut(s) 133, 205, 895
CviAII CATG 2 cut(s) 374, 904
CviQI GTAC 3 cut(s) 133, 205, 895
DdeI CTNAG 4 cut(s) 35, 369, 568, 927
DpnI GATC 5 cut(s) 57, 89, 366, 488, 539
DpnII GATC 5 cut(s) 55, 87, 364, 486, 537
Eco130I CCWWGG 2 cut(s) 186, 633
Eco31I GGTCTC 1 cut(s) 472
Eco47I GGWCC 4 cut(s) 272, 458, 761, 824
Eco57I CTGAAG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 186, 633
ErhI CCWWGG 2 cut(s) 186, 633
FaeI CATG 2 cut(s) 377, 907
FaiI YATR 6 cut(s) 375, 674, 899, 905, 918, 920
FaqI GGGAC 3 cut(s) 104, 168, 192
FatI CATG 2 cut(s) 373, 903
Fnu4HI GCNGC 4 cut(s) 114, 294, 444, 706
FokI GGATG 5 cut(s) 86, 146, 457, 716, 757
Fsp4HI GCNGC 4 cut(s) 114, 294, 444, 706
FspBI CTAG 2 cut(s) 102, 602
GluI GCNGC 4 cut(s) 114, 294, 444, 706
HaeIII GGCC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 2 cut(s) 377, 907
HinfI GANTC 6 cut(s) 4, 105, 156, 263, 491, 767
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 909
Hpy188I TCNGA 5 cut(s) 110, 143, 238, 394, 462
Hpy188III TCNNGA 5 cut(s) 275, 305, 326, 368, 695
Hpy8I GTNNAC 1 cut(s) 909
HpyAV CCTTC 3 cut(s) 329, 457, 499
HpyCH4III ACNGT 4 cut(s) 83, 209, 234, 498
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 7 cut(s) 377, 443, 626, 680, 701, 791, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 698
HpyF3I CTNAG 4 cut(s) 35, 369, 568, 927
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 2 cut(s) 377, 907
Kzo9I GATC 5 cut(s) 55, 87, 364, 486, 537
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 3 cut(s) 125, 455, 717
LweI GCATC 3 cut(s) 688, 738, 778
MaeI CTAG 2 cut(s) 102, 602
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 193, 492
MalI GATC 5 cut(s) 57, 89, 366, 488, 539
MboI GATC 5 cut(s) 55, 87, 364, 486, 537
MboII GAAGA 4 cut(s) 272, 314, 370, 532
MluCI AATT 7 cut(s) 18, 24, 29, 47, 519, 675, 686
MlyI GAGTC 4 cut(s) 165, 257, 500, 761
MnlI CCTC 8 cut(s) 173, 228, 330, 343, 346, 400, 524, 862
MseI TTAA 2 cut(s) 518, 774
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 116
Mva1269I GAATGC 2 cut(s) 249, 883
MwoI GCNNNNNNNGC 2 cut(s) 223, 698
NdeII GATC 5 cut(s) 55, 87, 364, 486, 537
NlaIII CATG 2 cut(s) 377, 907
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 193, 492
NspI RCATGY 2 cut(s) 377, 907
PaeI GCATGC 1 cut(s) 377
PciI ACATGT 1 cut(s) 903
PctI GAATGC 2 cut(s) 249, 883
PfeI GAWTC 2 cut(s) 4, 105
PflMI CCANNNNNTGG 1 cut(s) 816
PkrI GCNGC 4 cut(s) 115, 295, 445, 707
PleI GAGTC 4 cut(s) 164, 257, 499, 761
PpsI GAGTC 4 cut(s) 164, 257, 499, 761
PscI ACATGT 1 cut(s) 903
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 272, 458, 761, 824
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 134, 206, 896
RsaNI GTAC 3 cut(s) 133, 205, 895
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 2 cut(s) 518, 774
SatI GCNGC 4 cut(s) 114, 294, 444, 706
Sau3AI GATC 5 cut(s) 55, 87, 364, 486, 537
Sau96I GGNCC 4 cut(s) 272, 458, 761, 824
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 4 cut(s) 165, 257, 500, 761
SfaNI GCATC 3 cut(s) 688, 738, 778
SinI GGWCC 4 cut(s) 272, 458, 761, 824
SmiMI CAYNNNNRTG 1 cut(s) 902
SphI GCATGC 1 cut(s) 377
Sse9I AATT 7 cut(s) 18, 24, 29, 47, 519, 675, 686
SsiI CCGC 1 cut(s) 293
SspMI CTAG 2 cut(s) 102, 602
StyI CCWWGG 2 cut(s) 186, 633
TaaI ACNGT 4 cut(s) 83, 209, 234, 498
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 399, 489
TasI AATT 7 cut(s) 18, 24, 29, 47, 519, 675, 686
TatI WGTACW 3 cut(s) 132, 204, 894
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 4, 105
Tru1I TTAA 2 cut(s) 518, 774
Tru9I TTAA 2 cut(s) 518, 774
TscAI CASTG 3 cut(s) 501, 576, 670
TseFI GTSAC 2 cut(s) 193, 492
TseI GCWGC 3 cut(s) 113, 443, 705
Tsp45I GTSAC 2 cut(s) 193, 492
TspDTI ATGAA 4 cut(s) 17, 59, 567, 876
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 3 cut(s) 501, 576, 670
Van91I CCANNNNNTGG 1 cut(s) 816
VpaK11BI GGWCC 4 cut(s) 272, 458, 761, 824
XapI RAATTY 2 cut(s) 29, 686
XceI RCATGY 2 cut(s) 377, 907
XspI CTAG 2 cut(s) 102, 602
ZraI GACGTC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.