RchiOBHm_Chr1g0350601

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010086
Physical Location & Seq
Reverse (-)
43728981 .. 43731636
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57645

Sequence Viewer

Length: 672 bp
ATGACCAAGCAGCACGCTAACTGGTCCCCCTACGACAACAATGGCGGATCCGTGGTGGCGATTGCCGGAGCTGATTACTGTGTGATTGCTGCCGATACTCGGATGTCGACGGGTTACAGTATTCTCACCCGCGGCTACTCCAAAATCAGCAAATTAGCGGACAAAGCTTTTATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCTTTACAGAAGCATTTGACAGCTAAGCACTTGATTTATCAGCATCAGCATAACAAACAAATGAGCTGCCCTGCAATGGCTCAACTACTTTCCAATACTCTTTACTACAAACGCTTCTTTCCCTATTACGCCTTTAATGTTTTGGGTGGTCTAGACACTGAAGGGAAGGGTTGTGTCTTCACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGTGCCCAAGGTTCTGGTTCCACGCTCATCATGCCTTTCTTGGATAACCAACTGAAGTCTCCCAGTCCTCTCTTGTTGCCTGCTGTGGATGCTGTAACACCACTTTCAGAAGGAGAAGCAATTGATTTGGTCAAAACTGTTTTTGCATCTGCCACTGAGAGGGATATCTACACTGGAGACAGGCTTGAAATTTATGTCCTAAATGCTCATGGCACTCATCATGAATACATGGAACTGAGGAAAGATTGA

Protein Analysis

223

Amino Acids

24.56

Weight (kDa)

6.7

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 13 - 207 4e-36 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60820 AT3G60820 AT3G60820
fragaria_vesca FvH4_7g11920 FvH4_7g11920
malus_domestica MD02G1204000.v1.1 MD07G1122000.v1.1
prunus_persica Prupe.2G145800_v2.0.a1
pyrus_communis pycom02g16630 pycom07g11030
rosa_chinensis RchiOBHm_Chr1g0350601
rosa_laevigata RLG00000028469
rosa_multiflora Rmu_sc0014368.1_g000004 Rmu_sc0030263.1_g000001
rosa_roxburghii Rroxscaffold_4G00304680
rosa_rugosa Rorug01G0212500
rosa_samantha Rh1AG227000 Rh1BG195700 Rh1CG211800 Rh1DG223800
rosa_wichuraiana Rw1G019620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 45, 130, 132, 158
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 2 cut(s) 384, 497
AfiI CCNNNNNNNGG 4 cut(s) 99, 280, 411, 582
AgsI TTSAA 2 cut(s) 191, 611
AluBI AGCT 6 cut(s) 71, 167, 194, 206, 227, 270
AluI AGCT 6 cut(s) 71, 167, 194, 206, 227, 270
Alw26I GTCTC 2 cut(s) 486, 594
AlwI GGATC 2 cut(s) 42, 55
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 10, 89, 270
ApoI RAATTY 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 430
BamHI GGATCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 22, 76, 257
BcoDI GTCTC 2 cut(s) 486, 594
BfaI CTAG 1 cut(s) 356
BisI GCNGC 4 cut(s) 11, 90, 133, 271
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 4 cut(s) 12, 91, 134, 272
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 4 cut(s) 26, 49, 403, 442
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 4 cut(s) 256, 382, 502, 578
BmuI ACTGGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 618
Bpu1102I GCTNAGC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 51, 130, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 280, 411, 582
Bse1I ACTGG 3 cut(s) 26, 486, 601
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 51, 130, 430
BseGI GGATG 2 cut(s) 108, 517
BseLI CCNNNNNNNGG 4 cut(s) 99, 280, 411, 582
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 570, 650
BseNI ACTGG 3 cut(s) 26, 486, 601
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 3 cut(s) 22, 76, 257
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 4 cut(s) 99, 280, 411, 582
BsmAI GTCTC 2 cut(s) 486, 594
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 47
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 4 cut(s) 45, 130, 132, 158
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 571, 651
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 26, 49, 403, 442
BspPI GGATC 2 cut(s) 42, 55
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 3 cut(s) 26, 486, 601
BssECI CCNNGG 3 cut(s) 51, 130, 430
BssMI GATC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 80, 119, 562
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 15, 504
BstDEI CTNAG 3 cut(s) 228, 579, 659
BstDSI CCRYGG 2 cut(s) 51, 130
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 108, 517
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 1 cut(s) 50
BstMAI GTCTC 2 cut(s) 486, 594
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 4 cut(s) 164, 173, 454, 512
BstSLI GKGCMC 1 cut(s) 430
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 22, 76, 257
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 2 cut(s) 51, 130
BtsCI GGATG 2 cut(s) 108, 517
BtsIMutI CAGTG 3 cut(s) 360, 576, 594
Cac8I GCNNGC 2 cut(s) 15, 504
CciI TCATGA 1 cut(s) 643
Cfr13I GGNCC 1 cut(s) 24
Cfr42I CCGCGG 1 cut(s) 133
CviAII CATG 4 cut(s) 454, 632, 644, 652
DdeI CTNAG 3 cut(s) 228, 579, 659
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 430
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 384, 497
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 4 cut(s) 457, 635, 647, 655
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 453, 631, 643, 651
FauI CCCGC 1 cut(s) 137
FauNDI CATATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 11, 90, 133, 271
FokI GGATG 2 cut(s) 115, 524
Fsp4HI GCNGC 4 cut(s) 11, 90, 133, 271
FspBI CTAG 1 cut(s) 356
GluI GCNGC 4 cut(s) 11, 90, 133, 271
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 66
Hin1II CATG 4 cut(s) 457, 635, 647, 655
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 2 cut(s) 165, 204
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 102, 532
Hpy188III TCNNGA 2 cut(s) 356, 644
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 359, 364, 527
HpyCH4III ACNGT 3 cut(s) 80, 119, 562
HpyCH4V TGCA 2 cut(s) 278, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 173, 454, 512
HpyF3I CTNAG 3 cut(s) 228, 579, 659
Hsp92II CATG 4 cut(s) 457, 635, 647, 655
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 9 cut(s) 7, 79, 168, 288, 423, 499, 516, 582, 589
Lsp1109I GCAGC 3 cut(s) 22, 76, 257
LweI GCATC 4 cut(s) 256, 382, 502, 578
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 113, 517
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 2 cut(s) 171, 373
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 3 cut(s) 152, 543, 612
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 5 cut(s) 187, 405, 501, 576, 654
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 543
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 164, 173, 454, 512
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 47
NlaIII CATG 4 cut(s) 457, 635, 647, 655
NlaIV GGNNCC 4 cut(s) 26, 49, 403, 442
PagI TCATGA 1 cut(s) 643
PkrI GCNGC 4 cut(s) 12, 91, 134, 272
PspN4I GGNNCC 4 cut(s) 26, 49, 403, 442
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 47
SacII CCGCGG 1 cut(s) 133
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 11, 90, 133, 271
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 430
SetI ASST 7 cut(s) 73, 169, 196, 208, 229, 272, 436
SfaNI GCATC 4 cut(s) 256, 382, 502, 578
Sfr303I CCGCGG 1 cut(s) 133
SgrBI CCGCGG 1 cut(s) 133
SinI GGWCC 1 cut(s) 24
Sse9I AATT 3 cut(s) 152, 543, 612
SsiI CCGC 4 cut(s) 45, 130, 132, 158
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 3 cut(s) 80, 119, 562
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 152, 543, 612
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 3 cut(s) 367, 583, 601
TseI GCWGC 3 cut(s) 10, 89, 270
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 3 cut(s) 367, 583, 601
VpaK11BI GGWCC 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 1 cut(s) 612
XbaI TCTAGA 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.