Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010086

Physical Location & Seq

Genomic Coordinates Forward (+)

30321410 .. 30323537

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACAAAGAGAACCAAGAAGGCTGGTATTGTCGGGAAGTATGGAACCCGATATGGTGCTAGTCTGAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAGTACTTCTGTGAATTTTGCGGCAAGTATGCGGTGAAGAGAAAGGCTGTTGGAATCTGGGGTTGCAAAGACTGCGGCAAAGTGAAATCTGGAGGTGCCTACACACTCAATACTGCAAGTGCCGTGACAGTTAGGAGCACCATCCGAAGGCTCAGGGAGCAGACTGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0019774 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37ae	PF01780	4 - 88	9.8e-39	Ribosomal L37ae protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60820 AT3G60820 AT3G60820
fragaria_vesca	FvH4_7g11920 FvH4_7g11920
malus_domestica	MD02G1204000.v1.1 MD07G1122000.v1.1
prunus_persica	Prupe.2G145800_v2.0.a1
pyrus_communis	pycom02g16630 pycom07g11030
rosa_chinensis	RchiOBHm_Chr1g0350601
rosa_laevigata	RLG00000028469
rosa_multiflora	Rmu_sc0014368.1_g000004 Rmu_sc0030263.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304680
rosa_rugosa	Rorug01G0212500
rosa_samantha	Rh1AG227000 Rh1BG195700 Rh1CG211800 Rh1DG223800
rosa_wichuraiana	Rw1G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	3 cut(s)	126, 137, 180
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	252
Alw21I	GWGCWC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	245
BccI	CCATC	2 cut(s)	79, 254
BceAI	ACGGC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	127, 181
BlsI	GCNGC	2 cut(s)	128, 182
BmcAI	AGTACT	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	46, 202
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	56, 261, 271
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	245
BspACI	CCGC	3 cut(s)	126, 137, 180
BspCNI	CTCAG	3 cut(s)	57, 262, 270
BspLI	GGNNCC	2 cut(s)	46, 202
BspT107I	GGYRCC	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	65, 257, 270
BstF5I	GGATG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 262
BtsCI	GGATG	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	3 cut(s)	23, 152, 256
CviKI_1	RGCY	3 cut(s)	23, 152, 256
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	3 cut(s)	65, 257, 270
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
FaiI	YATR	3 cut(s)	42, 54, 135
Fnu4HI	GCNGC	2 cut(s)	127, 181
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	127, 181
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	127, 181
GsuI	CTGGAG	1 cut(s)	216
HinfI	GANTC	1 cut(s)	159
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	66, 251
Hpy188III	TCNNGA	2 cut(s)	34, 195
HpyAV	CCTTC	2 cut(s)	13, 246
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	171, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 262
HpyF3I	CTNAG	3 cut(s)	65, 257, 270
LmnI	GCTCC	2 cut(s)	240, 262
LpnPI	CCDG	4 cut(s)	9, 148, 180, 244
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	94, 154
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	60, 82, 191
MseI	TTAA	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	177, 262
NlaIV	GGNNCC	2 cut(s)	46, 202
NmuCI	GTSAC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	128, 182
PspN4I	GGNNCC	2 cut(s)	46, 202
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	127, 181
ScaI	AGTACT	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	2 cut(s)	93, 202
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	126, 137, 180
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	2 cut(s)	129, 183
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	119
XspI	CTAG	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.