Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010086

Physical Location & Seq

Genomic Coordinates Reverse (-)

43177735 .. 43180316

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCAAGCAGCACGCTAACTGGTCCCCCTACGACAACAATGGCGGGTACTCTCCTTTTCCATCTACTCTAAGCTCGTCTGCGCTTTTCAGCGATTGGAAATTTTTTTTTTTTTTTGGTGATTTTTATGGATTGGGCGATTTTTGCAGATCCGTGGTGGCGATTGCCGGAGCTGATTACTGTGTGATTGCCGCCGATACTCGGATGTCGACGGGTTACAGTATTCTCACCCGCGGCTACTCCAAAATCAGCAAATTAGCGGACAAAGCTTTTATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCTTTACAGAAGCATTTGACAGCTAAGCACTTGATTTATCAGCATCAGCATAACAAACAAATGAGCTGCCCTGCAATGGCTCAACTACTTTCCAATACTCTTTACTACAAACGCTTCTTTCCCTATTACGCCTTTAATGTTTTGGGTGGTCTAGACACTGAAGGGAAGGGTTGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGTGCCCAAGGTTCTGGTTCCACACTCATCATGCCTTTCTTGGATAACCAACTGAAGTCTCCCAGTCCTCTCTTGTTGCCTGCTGTGGATGCTGTAACACCACTTTCAGAAGGAGAAGCAATTGATTTGGTCAAAACTGTTTTTGCATCTGCCACTGAGAGGGATATCTACACTGGAGACAGGCTTGAAATTTATGTCCTAAATGCTCGCGGCACTCATCATGAATACATGGAACTGAGGAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0019774 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

257

Amino Acids

28.54

Weight (kDa)

6.65

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	51 - 241	3e-34	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60820 AT3G60820 AT3G60820
fragaria_vesca	FvH4_7g11920 FvH4_7g11920
malus_domestica	MD02G1204000.v1.1 MD07G1122000.v1.1
prunus_persica	Prupe.2G145800_v2.0.a1
pyrus_communis	pycom02g16630 pycom07g11030
rosa_chinensis	RchiOBHm_Chr1g0350601
rosa_laevigata	RLG00000028469
rosa_multiflora	Rmu_sc0014368.1_g000004 Rmu_sc0030263.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304680
rosa_rugosa	Rorug01G0212500
rosa_samantha	Rh1AG227000 Rh1BG195700 Rh1CG211800 Rh1DG223800
rosa_wichuraiana	Rw1G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AccII	CGCG	2 cut(s)	234, 735
AciI	CCGC	6 cut(s)	45, 192, 232, 234, 260, 735
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	101, 714
AcuI	CTGAAG	2 cut(s)	486, 599
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	201, 382, 684
AgsI	TTSAA	2 cut(s)	293, 713
AluBI	AGCT	7 cut(s)	75, 173, 269, 296, 308, 329, 372
AluI	AGCT	7 cut(s)	75, 173, 269, 296, 308, 329, 372
Alw26I	GTCTC	2 cut(s)	588, 696
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	10, 372
ApoI	RAATTY	2 cut(s)	101, 714
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	131, 220
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	22, 359
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	588, 696
BfaI	CTAG	1 cut(s)	458
BisI	GCNGC	5 cut(s)	11, 192, 235, 373, 736
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	5 cut(s)	12, 193, 236, 374, 737
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	26, 544
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	4 cut(s)	358, 484, 604, 680
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	720
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	153, 232, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 382, 684
Bse1I	ACTGG	3 cut(s)	26, 588, 703
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	153, 232, 532
BseGI	GGATG	2 cut(s)	210, 619
BseLI	CCNNNNNNNGG	3 cut(s)	201, 382, 684
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	672, 752
BseNI	ACTGG	3 cut(s)	26, 588, 703
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	22, 359
Bsh1236I	CGCG	2 cut(s)	234, 735
BshFI	GGCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	201, 382, 684
BsmAI	GTCTC	2 cut(s)	588, 696
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	149
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	6 cut(s)	45, 192, 232, 234, 260, 735
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	673, 753
BspFNI	CGCG	2 cut(s)	234, 735
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	26, 544
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	26, 588, 703
BssECI	CCNNGG	3 cut(s)	153, 232, 532
BssMI	GATC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	3 cut(s)	182, 221, 664
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	15, 606, 733
BstDEI	CTNAG	4 cut(s)	71, 330, 681, 761
BstDSI	CCRYGG	2 cut(s)	153, 232
BstF5I	GGATG	2 cut(s)	210, 619
BstFNI	CGCG	2 cut(s)	234, 735
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	2 cut(s)	588, 696
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 266, 275, 614
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	2 cut(s)	234, 735
BstV1I	GCAGC	2 cut(s)	22, 359
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	2 cut(s)	153, 232
BtsCI	GGATG	2 cut(s)	210, 619
BtsIMutI	CAGTG	3 cut(s)	462, 678, 696
Cac8I	GCNNGC	3 cut(s)	15, 606, 733
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	24
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	556, 746, 754
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	4 cut(s)	71, 330, 681, 761
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	486, 599
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	3 cut(s)	559, 749, 757
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	555, 745, 753
FauI	CCCGC	2 cut(s)	38, 239
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	11, 192, 235, 373, 736
FokI	GGATG	2 cut(s)	217, 626
Fsp4HI	GCNGC	5 cut(s)	11, 192, 235, 373, 736
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	5 cut(s)	11, 192, 235, 373, 736
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	559, 749, 757
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	2 cut(s)	267, 306
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	131, 220
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	204, 634
Hpy188III	TCNNGA	2 cut(s)	458, 746
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	461, 466, 629
HpyCH4III	ACNGT	3 cut(s)	182, 221, 664
HpyCH4V	TGCA	3 cut(s)	147, 380, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 266, 275, 614
HpyF3I	CTNAG	4 cut(s)	71, 330, 681, 761
Hsp92II	CATG	3 cut(s)	559, 749, 757
HspAI	GCGC	1 cut(s)	83
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	9 cut(s)	7, 181, 270, 390, 525, 601, 618, 684, 691
Lsp1109I	GCAGC	2 cut(s)	22, 359
LweI	GCATC	4 cut(s)	358, 484, 604, 680
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	2 cut(s)	215, 619
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	273, 475
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	4 cut(s)	101, 254, 645, 714
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	5 cut(s)	289, 507, 603, 678, 756
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	645
MvnI	CGCG	2 cut(s)	234, 735
MwoI	GCNNNNNNNGC	4 cut(s)	144, 266, 275, 614
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	559, 749, 757
NlaIV	GGNNCC	2 cut(s)	26, 544
PagI	TCATGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	12, 193, 236, 374, 737
PspN4I	GGNNCC	2 cut(s)	26, 544
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	5 cut(s)	11, 192, 235, 373, 736
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	8 cut(s)	77, 175, 271, 298, 310, 331, 374, 538
SfaNI	GCATC	4 cut(s)	358, 484, 604, 680
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	4 cut(s)	101, 254, 645, 714
SsiI	CCGC	6 cut(s)	45, 192, 232, 234, 260, 735
SspMI	CTAG	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	3 cut(s)	182, 221, 664
TaqI	TCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	101, 254, 645, 714
TauI	GCSGC	3 cut(s)	194, 237, 738
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	3 cut(s)	469, 685, 703
TseI	GCWGC	2 cut(s)	10, 372
TspDTI	ATGAA	1 cut(s)	762
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	3 cut(s)	469, 685, 703
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	2 cut(s)	101, 714
XbaI	TCTAGA	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.