RchiOBHm_Chr1g0369371

Coronatine-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005027
Physical Location & Seq
Reverse (-)
59207239 .. 59208834
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59361

Sequence Viewer

Length: 957 bp
ATGTTGGGGAAGAATGAAATGCCTATTGCATTCCCATTAGCAGCTGCTCTCAAAAAGTTGGATCTCCTATATGCGTTGCTCGACACTGAAGACCATTGTACTTTAATTCAAAAGTGCCCCAACTTGGAAGTTCTTGAGACAAGGAATGTCATTGGAGATAGAGGATTAGAAGTCCTTGCTCGGAGTTGCAAGAGACTGAAGAGGCTCCGAATTGAGCGAGGTGCTGTTGAGCAAGGTATGGAGGACGAAGATGGTGTTGTTTCACAGAGGGGTCTGATGGCTTTGGCACAGGGCTGCCTGGAACTGGAGTACTTGGCTGTGTACGTGTCAGATATCACAAATGCATCTCTGGAATACATTGGGACTCACTCTAAAAATCTAAATGATTTTCGCCTTGTCCTGCTTGACCGTGAAGAGACGATAACAGATTTACCACTTGACAATGGCGTTCGAGCTCTATTGAGGGGATGCCAAAAGCTTCGAAGGTTTGCTTTGTATCTCCGTCCTGGGGGTTTGACTGATTTGGGGCTTAGTTACGTGGGCCGGTATAGTCAAAATGTGAGATGGATGCTTCTAGGTTATGTTGGTGAATCTGATGCAGGGCTTTTGGAGTTTTCAAAGGGTTGCCTTAGTCTGCAGAACCTAGAATTGAGGGGCTGTTGCTTCAGTGAGGGTGCACTGGCTGTTGCAGTGATGCAGCTGACTGCGCTAAGGTACTTGTGGGTGCAAGGGTACAGGGGATCCCAAACGGGTCGTGATCTTTTGGCAATGACTCGCCCGTATTGGAATATTGAGTTGATTCCTCCTAGACGAGTTAATGTTCTTGATCCGAACGGGGAGGCAGCAGTGGCTGAGCATCCAGCTCATATTCTTGCATACTACTCTCTTGCTGGACCAAGAACAGATTTTCCAAATACTGTTATCCCCTTGTATCCAGAGTCTTTGATTAACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box-like

Protein Analysis

318

Amino Acids

35.44

Weight (kDa)

5.72

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 69, 735, 748, 821
AcuI CTGAAG 3 cut(s) 108, 218, 649
AfaI GTAC 5 cut(s) 100, 311, 323, 716, 734
AfiI CCNNNNNNNGG 3 cut(s) 124, 304, 508
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 110, 618
AjnI CCWGG 2 cut(s) 297, 505
AloI GAACNNNNNNTCC 2 cut(s) 892, 924
AluBI AGCT 5 cut(s) 44, 455, 478, 700, 863
AluI AGCT 5 cut(s) 44, 455, 478, 700, 863
Alw21I GWGCWC 2 cut(s) 457, 679
Alw26I GTCTC 3 cut(s) 131, 187, 410
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 4 cut(s) 69, 735, 748, 821
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 1 cut(s) 541
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 5 cut(s) 41, 44, 294, 697, 842
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 541, 893
AsuHPI GGTGA 1 cut(s) 599
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 893
BaeGI GKGCMC 2 cut(s) 119, 679
BamHI GGATCC 1 cut(s) 740
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 457, 679
BbvI GCAGC 5 cut(s) 31, 53, 281, 709, 854
BccI CCATC 3 cut(s) 245, 271, 558
BciT130I CCWGG 2 cut(s) 299, 507
BciVI GTATCC 1 cut(s) 942
BcoDI GTCTC 3 cut(s) 131, 187, 410
BfaI CTAG 3 cut(s) 575, 644, 807
BfmI CTRYAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 942
BisI GCNGC 5 cut(s) 42, 45, 295, 698, 843
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 5 cut(s) 43, 46, 296, 699, 844
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 299, 507
Bme18I GGWCC 1 cut(s) 893
BmgT120I GGNCC 2 cut(s) 541, 893
BmiI GGNNCC 2 cut(s) 206, 742
BmrFI CCNGG 2 cut(s) 299, 507
BmsI GCATC 6 cut(s) 353, 458, 558, 586, 684, 865
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 2 cut(s) 325, 538
BsaJI CCNNGG 1 cut(s) 506
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 304, 508
Bse118I RCCGGY 1 cut(s) 543
Bse1I ACTGG 2 cut(s) 309, 684
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 2 cut(s) 299, 507
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 3 cut(s) 473, 573, 856
BseLI CCNNNNNNNGG 3 cut(s) 124, 304, 508
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 1 cut(s) 843
BseNI ACTGG 2 cut(s) 309, 684
BseSI GKGCMC 2 cut(s) 119, 679
BseXI GCAGC 5 cut(s) 31, 53, 281, 709, 854
BshFI GGCC 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 457, 679
BsiSI CCGG 1 cut(s) 544
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 124, 304, 508
BsmAI GTCTC 3 cut(s) 131, 187, 410
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 119, 457, 679
Bsp143I GATC 4 cut(s) 61, 740, 757, 826
Bsp1720I GCTNAGC 1 cut(s) 852
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 1 cut(s) 844
BspLI GGNNCC 2 cut(s) 206, 742
BspMAI CTGCAG 1 cut(s) 639
BspPI GGATC 4 cut(s) 69, 735, 748, 821
BspT104I TTCGAA 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 543
BsrI ACTGG 2 cut(s) 309, 684
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 4 cut(s) 61, 740, 757, 826
Bst2UI CCWGG 2 cut(s) 299, 507
Bst4CI ACNGT 2 cut(s) 410, 919
Bst6I CTCTTC 2 cut(s) 194, 408
BstBAI YACGTR 2 cut(s) 325, 538
BstBI TTCGAA 1 cut(s) 481
BstDEI CTNAG 4 cut(s) 530, 629, 710, 852
BstF5I GGATG 3 cut(s) 473, 573, 856
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 4 cut(s) 64, 743, 760, 829
BstMAI GTCTC 3 cut(s) 131, 187, 410
BstMBI GATC 4 cut(s) 61, 740, 757, 826
BstMWI GCNNNNNNNGC 2 cut(s) 706, 848
BstNI CCWGG 2 cut(s) 299, 507
BstSCI CCNGG 2 cut(s) 297, 505
BstSFI CTRYAG 1 cut(s) 635
BstSLI GKGCMC 2 cut(s) 119, 679
BstV1I GCAGC 5 cut(s) 31, 53, 281, 709, 854
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 61, 740
BstYI RGATCY 2 cut(s) 61, 740
BsuI GTATCC 1 cut(s) 942
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 473, 573, 856
BtsI GCAGTG 2 cut(s) 696, 852
BtsIMutI CAGTG 5 cut(s) 84, 673, 677, 696, 852
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 541, 893
Csp6I GTAC 5 cut(s) 99, 310, 322, 715, 733
CviQI GTAC 5 cut(s) 99, 310, 322, 715, 733
DdeI CTNAG 4 cut(s) 530, 629, 710, 852
DpnI GATC 4 cut(s) 63, 742, 759, 828
DpnII GATC 4 cut(s) 61, 740, 757, 826
Eam1104I CTCTTC 2 cut(s) 194, 408
EarI CTCTTC 2 cut(s) 194, 408
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 893
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 3 cut(s) 108, 218, 649
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 297, 505
EcoRV GATATC 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 410
FaiI YATR 8 cut(s) 70, 72, 239, 549, 582, 867, 877, 955
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FaqI GGGAC 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 42, 45, 295, 698, 843
FokI GGATG 3 cut(s) 480, 580, 843
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 5 cut(s) 42, 45, 295, 698, 843
FspBI CTAG 3 cut(s) 575, 644, 807
GlaI GCGC 1 cut(s) 708
GluI GCNGC 5 cut(s) 42, 45, 295, 698, 843
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 544
HhaI GCGC 1 cut(s) 709
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 5 cut(s) 364, 590, 772, 799, 938
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 2 cut(s) 322, 677
Hpy188I TCNGA 6 cut(s) 183, 209, 276, 331, 595, 831
Hpy188III TCNNGA 5 cut(s) 134, 350, 755, 824, 935
Hpy8I GTNNAC 2 cut(s) 322, 677
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 2 cut(s) 410, 919
HpyCH4IV ACGT 2 cut(s) 324, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 706, 848
HpyF3I CTNAG 4 cut(s) 530, 629, 710, 852
HpySE526I ACGT 2 cut(s) 324, 537
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 4 cut(s) 61, 740, 757, 826
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 5 cut(s) 31, 53, 281, 709, 854
LweI GCATC 6 cut(s) 353, 458, 558, 586, 684, 865
MaeI CTAG 3 cut(s) 575, 644, 807
MaeII ACGT 2 cut(s) 324, 537
MaeIII GTNAC 1 cut(s) 533
MalI GATC 4 cut(s) 63, 742, 759, 828
MboI GATC 4 cut(s) 61, 740, 757, 826
MboII GAAGA 5 cut(s) 22, 101, 211, 260, 425
MflI RGATCY 2 cut(s) 61, 740
MhlI GDGCHC 3 cut(s) 119, 457, 679
MluCI AATT 3 cut(s) 105, 210, 647
MlyI GAGTC 3 cut(s) 358, 766, 947
MmeI TCCRAC 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 3 cut(s) 104, 816, 948
MspA1I CMGCKG 2 cut(s) 44, 700
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 2 cut(s) 299, 507
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 299, 507
MwoI GCNNNNNNNGC 2 cut(s) 706, 848
NdeII GATC 4 cut(s) 61, 740, 757, 826
NlaIV GGNNCC 2 cut(s) 206, 742
NsiI ATGCAT 1 cut(s) 346
NspV TTCGAA 1 cut(s) 481
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 590, 799
PkrI GCNGC 5 cut(s) 43, 46, 296, 699, 844
PleI GAGTC 3 cut(s) 358, 766, 946
PpsI GAGTC 3 cut(s) 358, 766, 946
Ppu21I YACGTR 2 cut(s) 325, 538
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 297, 505
PspGI CCWGG 2 cut(s) 297, 505
PspN4I GGNNCC 2 cut(s) 206, 742
PspPI GGNCC 2 cut(s) 541, 893
PstI CTGCAG 1 cut(s) 639
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 2 cut(s) 61, 740
PvuII CAGCTG 2 cut(s) 44, 700
RsaI GTAC 5 cut(s) 100, 311, 323, 716, 734
RsaNI GTAC 5 cut(s) 99, 310, 322, 715, 733
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 3 cut(s) 104, 816, 948
SatI GCNGC 5 cut(s) 42, 45, 295, 698, 843
Sau3AI GATC 4 cut(s) 61, 740, 757, 826
Sau96I GGNCC 2 cut(s) 541, 893
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 3 cut(s) 358, 766, 947
ScrFI CCNGG 2 cut(s) 299, 507
SduI GDGCHC 3 cut(s) 119, 457, 679
SfaNI GCATC 6 cut(s) 353, 458, 558, 586, 684, 865
SfcI CTRYAG 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 105, 210, 647
SspI AATATT 1 cut(s) 790
SspMI CTAG 3 cut(s) 575, 644, 807
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 297, 505
TaaI ACNGT 2 cut(s) 410, 919
TaiI ACGT 2 cut(s) 327, 540
TaqI TCGA 3 cut(s) 81, 451, 481
TasI AATT 3 cut(s) 105, 210, 647
TatI WGTACW 2 cut(s) 98, 309
TfiI GAWTC 2 cut(s) 590, 799
Tru1I TTAA 3 cut(s) 104, 816, 948
Tru9I TTAA 3 cut(s) 104, 816, 948
TscAI CASTG 5 cut(s) 91, 673, 684, 696, 852
TseI GCWGC 5 cut(s) 41, 44, 294, 697, 842
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 5 cut(s) 91, 673, 684, 696, 852
VneI GTGCAC 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 893
XspI CTAG 3 cut(s) 575, 644, 807
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.