Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003612.1

Orthogroup ID

OG0005027

Physical Location & Seq

Genomic Coordinates Forward (+)

80046 .. 83220

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003612.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atgaatactggaatgtccgatgtggtagccggctgcgtgatgccgtatatcaaagactcgaaggaccgggacgccgtgtcgttggtgtgccgacggtggtacgagctggacgcgctcacgcgcgagcacgtgaccatcgcgctctgctacacgacgactcccgagaggctcaggaggcggttccggcagctcaagtcgctgaagctcaagggaaagccgagggcggcgatgtttaatctgataccggaggattggggaggctatgtgacgccgtgggtggaggagattgccgagtcgtttaagagcttgaaggccttgcatttccggagaatgattgtgagtgattccgacctggagctattggcgcggtcacgcggccgtgagctccaatcgcttaagctcgacaagtgctccggcttttcgactgacggccttgtccacatcgcccgcttctgcagggatttgaggaccttgtttttggaggagagctcgataattgagaaagaggatgagtggggtgaatggctacatgagcttgctacaagcaacactgtactcgagactttaaacttctatatgacggatcttggcagaatcagatttgaagaccttgaactcatagccaggaattgcccctccttaaccactgtgaaaattagcgattgtgaaattttggatcttctgggtttcttccgccatgcaactgctttagaagaattttgtggaggttccttcgatgatcgatcagaaaatgatcaatcagagaagtactcagttgtatcactgccacgaaagatatgtcttttgggtctaacgatgttggggaagaatgaaatgcctattgtattcccattagcagctgctctcaaaaagttggatctcctatatgcgttgctcgacactgaagaccattgtactttaattcaaaagtgccccaacttggaagttcttgagacaaggaatgtcattggagatagaggattagaagtccttgcgcggagttgcaagagactgaagaggctccgaattgagcgaggtgctgatgagcaaggtatggaggacgaagatggtgttgtttcacagaggggtctgatggctttggcacagggctgcctggaactggagtacttggctgtctacgtgtcagatatcacaaatgcatctctggaatacattgggactcactctaaaaatctaaatgattttcgccttgtcctgcttgaccgtgaagagacgataacagatttaccacttgacaatggcgttcgagctctattgaggggatgccaaaagcttcgaaggtttgctttgtatctccgtcctgggggtttgactgatttggggcttagttacgtgggccggtatagtcaaaatgtgagatggatgcttctaggttatgttggtgaatctgatgcagggcttttggagttttcaaagggttgccttagtctgcagaacctagaattgaggggctgttgctttagtgagggtgcactggctgttgcagtgatgcagctgactgcgctaaggtacttgtgggtgcaagggtacaggggatcccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box-like

Protein Analysis

521

Amino Acids

59.1

Weight (kDa)

5.65

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39940
fragaria_vesca	FvH4_7g24000 FvH4_7g24000 FvH4_7g24000
malus_domestica	MD01G1147000.v1.1 MD07G1213600.v1.1
prunus_persica	Prupe.2G246000_v2.0.a1
pyrus_communis	pycom01g16610 pycom07g19640
rosa_chinensis	RchiOBHm_Chr1g0369351 RchiOBHm_Chr1g0369371 RchiOBHm_Chr1g0369381
rosa_laevigata	RLG00000027134 RLG00000027135
rosa_multiflora	Rmu_sc0001482.1_g000008 Rmu_sc0003612.1_g000021
rosa_roxburghii	Rroxscaffold_4G00287690 Rroxscaffold_4G00287710
rosa_rugosa	Rorug01G0349700 Rorug01G0349700
rosa_samantha	Rh1AG357000 Rh1AG357300 Rh1BG321000 Rh1BG321300 Rh1CG335000 Rh1CG335200 Rh1DG351700 Rh1DG352000
rosa_wichuraiana	Rw1G031520 Rw1G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	1137
AccII	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	7 cut(s)	178, 224, 367, 375, 448, 694, 997
AclWI	GGATC	4 cut(s)	591, 684, 885, 1551
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	669, 716
AcuI	CTGAAG	3 cut(s)	221, 924, 1034
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	2 cut(s)	72, 269
AfaI	GTAC	7 cut(s)	101, 555, 770, 916, 1127, 1532, 1550
AfiI	CCNNNNNNNGG	3 cut(s)	940, 1120, 1324
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	1140
AgsI	TTSAA	5 cut(s)	310, 605, 614, 926, 1434
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	4 cut(s)	351, 623, 1113, 1321
Alw21I	GWGCWC	6 cut(s)	129, 387, 413, 491, 1273, 1495
Alw26I	GTCTC	4 cut(s)	554, 947, 1003, 1226
Alw44I	GTGCAC	1 cut(s)	1491
AlwI	GGATC	4 cut(s)	591, 684, 885, 1551
Ama87I	CYCGRG	2 cut(s)	161, 557
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	4 cut(s)	312, 376, 430, 1357
ApaLI	GTGCAC	1 cut(s)	1491
ApeKI	GCWGC	6 cut(s)	33, 187, 857, 860, 1110, 1513
ApoI	RAATTY	2 cut(s)	669, 716
ArsI	GACNNNNNNTTYG	4 cut(s)	460, 492, 784, 816
AspLEI	GCGC	6 cut(s)	115, 123, 142, 367, 997, 1525
AspS9I	GGNCC	3 cut(s)	64, 468, 1357
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	530, 1415
AsuII	TTCGAA	1 cut(s)	1297
AvaI	CYCGRG	2 cut(s)	161, 557
AvaII	GGWCC	2 cut(s)	64, 468
BaeGI	GKGCMC	2 cut(s)	935, 1495
BamHI	GGATCC	1 cut(s)	1556
BanII	GRGCYC	3 cut(s)	387, 491, 1273
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	612, 912
Bbv12I	GWGCWC	6 cut(s)	129, 387, 413, 491, 1273, 1495
BbvI	GCAGC	6 cut(s)	20, 199, 847, 869, 1097, 1525
BccI	CCATC	4 cut(s)	143, 1061, 1087, 1374
BceAI	ACGGC	5 cut(s)	28, 59, 256, 363, 445
BciT130I	CCWGG	4 cut(s)	353, 625, 1115, 1323
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	4 cut(s)	554, 947, 1003, 1226
BfaI	CTAG	2 cut(s)	1391, 1460
BfmI	CTRYAG	2 cut(s)	454, 1451
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	8 cut(s)	34, 188, 225, 376, 858, 861, 1111, 1514
BlsI	GCNGC	8 cut(s)	35, 189, 226, 377, 859, 862, 1112, 1515
BmcAI	AGTACT	2 cut(s)	770, 1127
Bme1390I	CCNGG	5 cut(s)	68, 353, 625, 1115, 1323
Bme18I	GGWCC	2 cut(s)	64, 468
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	2 cut(s)	161, 557
BmgT120I	GGNCC	3 cut(s)	64, 468, 1357
BmiI	GGNNCC	4 cut(s)	182, 730, 1022, 1558
BmrFI	CCNGG	5 cut(s)	68, 353, 625, 1115, 1323
BmsI	GCATC	6 cut(s)	30, 1169, 1274, 1374, 1402, 1500
BpiI	GAAGAC	2 cut(s)	612, 912
BplI	GAGNNNNNCTC	4 cut(s)	473, 505, 755, 787
BpmI	CTGGAG	2 cut(s)	374, 1142
Bpu10I	CCTNAGC	2 cut(s)	170, 1526
Bpu14I	TTCGAA	1 cut(s)	1297
BpuEI	CTTGAG	3 cut(s)	176, 191, 971
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	742
BsaAI	YACGTR	3 cut(s)	130, 1141, 1354
BsaHI	GRCGYC	2 cut(s)	72, 269
BsaJI	CCNNGG	3 cut(s)	218, 272, 1322
BsaWI	WCCGGW	2 cut(s)	244, 324
BsaXI	ACNNNNNCTCC	6 cut(s)	142, 172, 249, 279, 395, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	940, 1120, 1324
Bse118I	RCCGGY	2 cut(s)	29, 1359
Bse1I	ACTGG	3 cut(s)	13, 1125, 1500
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	4 cut(s)	353, 625, 1115, 1323
BseCI	ATCGAT	1 cut(s)	742
BseDI	CCNNGG	3 cut(s)	218, 272, 1322
BseGI	GGATG	3 cut(s)	514, 1289, 1389
BseLI	CCNNNNNNNGG	3 cut(s)	940, 1120, 1324
BseMII	CTCAG	2 cut(s)	184, 786
BseNI	ACTGG	3 cut(s)	13, 1125, 1500
BseRI	GAGGAG	2 cut(s)	296, 497
BseSI	GKGCMC	2 cut(s)	935, 1495
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	6 cut(s)	20, 199, 847, 869, 1097, 1525
Bsh1236I	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	4 cut(s)	314, 378, 432, 1359
BshVI	ATCGAT	1 cut(s)	742
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	6 cut(s)	129, 387, 413, 491, 1273, 1495
BsiHKCI	CYCGRG	2 cut(s)	161, 557
BsiSI	CCGG	7 cut(s)	30, 67, 184, 245, 325, 414, 1360
BslFI	GGGAC	2 cut(s)	83, 1192
BslI	CCNNNNNNNGG	3 cut(s)	940, 1120, 1324
BsmAI	GTCTC	4 cut(s)	554, 947, 1003, 1226
BsmBI	CGTCTC	1 cut(s)	1226
BsmFI	GGGAC	2 cut(s)	83, 1192
BsnI	GGCC	4 cut(s)	314, 378, 432, 1359
BsoBI	CYCGRG	2 cut(s)	161, 557
Bsp119I	TTCGAA	1 cut(s)	1297
Bsp1286I	GDGCHC	7 cut(s)	129, 387, 413, 491, 935, 1273, 1495
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
BspACI	CCGC	7 cut(s)	178, 224, 367, 375, 448, 694, 997
BspANI	GGCC	4 cut(s)	314, 378, 432, 1359
BspCNI	CTCAG	2 cut(s)	183, 785
BspDI	ATCGAT	1 cut(s)	742
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
BspLI	GGNNCC	4 cut(s)	182, 730, 1022, 1558
BspMAI	CTGCAG	2 cut(s)	458, 1455
BspPI	GGATC	4 cut(s)	591, 684, 885, 1551
BspT104I	TTCGAA	1 cut(s)	1297
BspTI	CTTAAG	1 cut(s)	395
BsrFI	RCCGGY	2 cut(s)	29, 1359
BsrI	ACTGG	3 cut(s)	13, 1125, 1500
BssAI	RCCGGY	2 cut(s)	29, 1359
BssECI	CCNNGG	3 cut(s)	218, 272, 1322
BssMI	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
BssNI	GRCGYC	2 cut(s)	72, 269
Bst2UI	CCWGG	4 cut(s)	353, 625, 1115, 1323
Bst4CI	ACNGT	4 cut(s)	96, 553, 649, 1226
Bst6I	CTCTTC	2 cut(s)	1010, 1224
BstACI	GRCGYC	2 cut(s)	72, 269
BstAFI	CTTAAG	1 cut(s)	395
BstBAI	YACGTR	3 cut(s)	130, 1141, 1354
BstBI	TTCGAA	1 cut(s)	1297
BstC8I	GCNNGC	4 cut(s)	31, 125, 448, 537
BstDEI	CTNAG	5 cut(s)	170, 772, 1346, 1445, 1526
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	514, 1289, 1389
BstFNI	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
BstHHI	GCGC	6 cut(s)	115, 123, 142, 367, 997, 1525
BstKTI	GATC	7 cut(s)	586, 679, 742, 746, 757, 880, 1559
BstMAI	GTCTC	4 cut(s)	554, 947, 1003, 1226
BstMBI	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	8 cut(s)	112, 175, 184, 196, 364, 391, 532, 1522
BstNI	CCWGG	4 cut(s)	353, 625, 1115, 1323
BstSCI	CCNGG	5 cut(s)	66, 351, 623, 1113, 1321
BstSFI	CTRYAG	2 cut(s)	454, 1451
BstSLI	GKGCMC	2 cut(s)	935, 1495
BstUI	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
BstV1I	GCAGC	6 cut(s)	20, 199, 847, 869, 1097, 1525
BstV2I	GAAGAC	2 cut(s)	612, 912
BstX2I	RGATCY	4 cut(s)	583, 676, 877, 1556
BstYI	RGATCY	4 cut(s)	583, 676, 877, 1556
BstZI	CGGCCG	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	742
BsuRI	GGCC	4 cut(s)	314, 378, 432, 1359
BsuTUI	ATCGAT	1 cut(s)	742
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	3 cut(s)	121, 242, 427
BtsCI	GGATG	3 cut(s)	514, 1289, 1389
BtsI	GCAGTG	2 cut(s)	782, 1512
BtsIMutI	CAGTG	6 cut(s)	549, 645, 782, 900, 1493, 1512
Cac8I	GCNNGC	4 cut(s)	31, 125, 448, 537
CfoI	GCGC	6 cut(s)	115, 123, 142, 367, 997, 1525
Cfr10I	RCCGGY	2 cut(s)	29, 1359
Cfr13I	GGNCC	3 cut(s)	64, 468, 1357
ClaI	ATCGAT	1 cut(s)	742
CseI	GACGC	3 cut(s)	80, 119, 277
Csp6I	GTAC	7 cut(s)	100, 554, 769, 915, 1126, 1531, 1549
CviAII	CATG	2 cut(s)	530, 698
CviQI	GTAC	7 cut(s)	100, 554, 769, 915, 1126, 1531, 1549
DdeI	CTNAG	5 cut(s)	170, 772, 1346, 1445, 1526
DpnI	GATC	7 cut(s)	585, 678, 741, 745, 756, 879, 1558
DpnII	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
DraI	TTTAAA	1 cut(s)	567
DrdI	GACNNNNNNGTC	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	1010, 1224
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	2 cut(s)	1010, 1224
EciI	GGCGGA	1 cut(s)	683
Ecl136II	GAGCTC	3 cut(s)	385, 489, 1271
EclXI	CGGCCG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	3 cut(s)	387, 491, 1273
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	2 cut(s)	64, 468
Eco52I	CGGCCG	1 cut(s)	376
Eco53kI	GAGCTC	3 cut(s)	385, 489, 1271
Eco57I	CTGAAG	3 cut(s)	221, 924, 1034
Eco72I	CACGTG	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	161, 557
EcoICRI	GAGCTC	3 cut(s)	385, 489, 1271
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRII	CCWGG	4 cut(s)	351, 623, 1113, 1321
EcoRV	GATATC	1 cut(s)	1150
EcoT22I	ATGCAT	1 cut(s)	1162
EcoT38I	GRGCYC	3 cut(s)	387, 491, 1273
Esp3I	CGTCTC	1 cut(s)	1226
FaeI	CATG	2 cut(s)	533, 701
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	2 cut(s)	83, 1192
FatI	CATG	2 cut(s)	529, 697
FauI	CCCGC	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	1137
Fnu4HI	GCNGC	8 cut(s)	34, 188, 225, 376, 858, 861, 1111, 1514
FokI	GGATG	3 cut(s)	521, 1296, 1396
FriOI	GRGCYC	3 cut(s)	387, 491, 1273
Fsp4HI	GCNGC	8 cut(s)	34, 188, 225, 376, 858, 861, 1111, 1514
FspBI	CTAG	2 cut(s)	1391, 1460
GlaI	GCGC	6 cut(s)	114, 122, 141, 366, 996, 1524
GluI	GCNGC	8 cut(s)	34, 188, 225, 376, 858, 861, 1111, 1514
GsuI	CTGGAG	2 cut(s)	374, 1142
HaeIII	GGCC	4 cut(s)	314, 378, 432, 1359
HapII	CCGG	7 cut(s)	30, 67, 184, 245, 325, 414, 1360
HgaI	GACGC	3 cut(s)	80, 119, 277
HhaI	GCGC	6 cut(s)	115, 123, 142, 367, 997, 1525
Hin1I	GRCGYC	2 cut(s)	72, 269
Hin1II	CATG	2 cut(s)	533, 701
Hin6I	GCGC	6 cut(s)	113, 121, 140, 365, 995, 1523
HinP1I	GCGC	6 cut(s)	113, 121, 140, 365, 995, 1523
HindIII	AAGCTT	1 cut(s)	1292
HinfI	GANTC	7 cut(s)	56, 157, 293, 344, 594, 1180, 1406
HpaII	CCGG	7 cut(s)	30, 67, 184, 245, 325, 414, 1360
HphI	GGTGA	2 cut(s)	530, 1415
Hpy166II	GTNNAC	3 cut(s)	439, 1138, 1493
Hpy188III	TCNNGA	6 cut(s)	161, 172, 325, 559, 950, 1166
Hpy8I	GTNNAC	3 cut(s)	439, 1138, 1493
Hpy99I	CGWCG	2 cut(s)	96, 157
HpyAV	CCTTC	4 cut(s)	55, 304, 742, 1293
HpyCH4III	ACNGT	4 cut(s)	96, 553, 649, 1226
HpyCH4IV	ACGT	3 cut(s)	129, 1140, 1353
HpyF10VI	GCNNNNNNNGC	8 cut(s)	112, 175, 184, 196, 364, 391, 532, 1522
HpyF3I	CTNAG	5 cut(s)	170, 772, 1346, 1445, 1526
HpySE526I	ACGT	3 cut(s)	129, 1140, 1353
Hsp92I	GRCGYC	2 cut(s)	72, 269
Hsp92II	CATG	2 cut(s)	533, 701
HspAI	GCGC	6 cut(s)	113, 121, 140, 365, 995, 1523
Kpn2I	TCCGGA	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
LmnI	GCTCC	4 cut(s)	355, 390, 416, 1026
Lsp1109I	GCAGC	6 cut(s)	20, 199, 847, 869, 1097, 1525
LweI	GCATC	6 cut(s)	30, 1169, 1274, 1374, 1402, 1500
MaeI	CTAG	2 cut(s)	1391, 1460
MaeII	ACGT	3 cut(s)	129, 1140, 1353
MaeIII	GTNAC	4 cut(s)	130, 265, 369, 1349
MalI	GATC	7 cut(s)	585, 678, 741, 745, 756, 879, 1558
MboI	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
MboII	GAAGA	9 cut(s)	617, 671, 682, 725, 838, 917, 1027, 1076, 1241
MflI	RGATCY	4 cut(s)	583, 676, 877, 1556
MhlI	GDGCHC	7 cut(s)	129, 387, 413, 491, 935, 1273, 1495
MluCI	AATT	8 cut(s)	495, 628, 654, 669, 716, 921, 1026, 1463
MlyI	GAGTC	4 cut(s)	50, 151, 302, 1174
MmeI	TCCRAC	2 cut(s)	372, 855
Mph1103I	ATGCAT	1 cut(s)	1162
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	6 cut(s)	234, 300, 396, 566, 641, 920
MspA1I	CMGCKG	2 cut(s)	860, 1516
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	7 cut(s)	30, 67, 184, 245, 325, 414, 1360
MspR9I	CCNGG	5 cut(s)	68, 353, 625, 1115, 1323
MvaI	CCWGG	4 cut(s)	353, 625, 1115, 1323
MvnI	CGCG	7 cut(s)	113, 121, 123, 140, 367, 375, 997
MwoI	GCNNNNNNNGC	8 cut(s)	112, 175, 184, 196, 364, 391, 532, 1522
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	533, 701
NlaIV	GGNNCC	4 cut(s)	182, 730, 1022, 1558
NmeAIII	GCCGAG	2 cut(s)	243, 316
NmuCI	GTSAC	3 cut(s)	130, 265, 369
NsiI	ATGCAT	1 cut(s)	1162
NspV	TTCGAA	1 cut(s)	1297
PaeR7I	CTCGAG	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	344, 594, 1406
PkrI	GCNGC	8 cut(s)	35, 189, 226, 377, 859, 862, 1112, 1515
PleI	GAGTC	4 cut(s)	50, 151, 301, 1174
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	4 cut(s)	50, 151, 301, 1174
Ppu21I	YACGTR	3 cut(s)	130, 1141, 1354
PpuMI	RGGWCCY	1 cut(s)	468
Psp124BI	GAGCTC	3 cut(s)	387, 491, 1273
Psp5II	RGGWCCY	1 cut(s)	468
Psp6I	CCWGG	4 cut(s)	351, 623, 1113, 1321
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	4 cut(s)	351, 623, 1113, 1321
PspN4I	GGNNCC	4 cut(s)	182, 730, 1022, 1558
PspPI	GGNCC	3 cut(s)	64, 468, 1357
PspPPI	RGGWCCY	1 cut(s)	468
PstI	CTGCAG	2 cut(s)	458, 1455
PsuI	RGATCY	4 cut(s)	583, 676, 877, 1556
PvuII	CAGCTG	2 cut(s)	860, 1516
RsaI	GTAC	7 cut(s)	101, 555, 770, 916, 1127, 1532, 1550
RsaNI	GTAC	7 cut(s)	100, 554, 769, 915, 1126, 1531, 1549
SacI	GAGCTC	3 cut(s)	387, 491, 1273
SaqAI	TTAA	6 cut(s)	234, 300, 396, 566, 641, 920
SatI	GCNGC	8 cut(s)	34, 188, 225, 376, 858, 861, 1111, 1514
Sau3AI	GATC	7 cut(s)	583, 676, 739, 743, 754, 877, 1556
Sau96I	GGNCC	3 cut(s)	64, 468, 1357
ScaI	AGTACT	2 cut(s)	770, 1127
SchI	GAGTC	4 cut(s)	50, 151, 302, 1174
ScrFI	CCNGG	5 cut(s)	68, 353, 625, 1115, 1323
SduI	GDGCHC	7 cut(s)	129, 387, 413, 491, 935, 1273, 1495
SfaNI	GCATC	6 cut(s)	30, 1169, 1274, 1374, 1402, 1500
SfcI	CTRYAG	2 cut(s)	454, 1451
Sfr274I	CTCGAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	1297
SinI	GGWCC	2 cut(s)	64, 468
SlaI	CTCGAG	1 cut(s)	557
SmlI	CTYRAG	5 cut(s)	191, 206, 395, 557, 950
SmoI	CTYRAG	5 cut(s)	191, 206, 395, 557, 950
Sse9I	AATT	8 cut(s)	495, 628, 654, 669, 716, 921, 1026, 1463
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	7 cut(s)	178, 224, 367, 375, 448, 694, 997
SspMI	CTAG	2 cut(s)	1391, 1460
SstI	GAGCTC	3 cut(s)	387, 491, 1273
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	5 cut(s)	66, 351, 623, 1113, 1321
TaaI	ACNGT	4 cut(s)	96, 553, 649, 1226
TaiI	ACGT	3 cut(s)	132, 1143, 1356
TasI	AATT	8 cut(s)	495, 628, 654, 669, 716, 921, 1026, 1463
TatI	WGTACW	4 cut(s)	553, 768, 914, 1125
TauI	GCSGC	2 cut(s)	227, 378
TfiI	GAWTC	3 cut(s)	344, 594, 1406
Tru1I	TTAA	6 cut(s)	234, 300, 396, 566, 641, 920
Tru9I	TTAA	6 cut(s)	234, 300, 396, 566, 641, 920
TscAI	CASTG	6 cut(s)	556, 652, 789, 907, 1500, 1512
TseFI	GTSAC	3 cut(s)	130, 265, 369
TseI	GCWGC	6 cut(s)	33, 187, 857, 860, 1110, 1513
Tsp45I	GTSAC	3 cut(s)	130, 265, 369
TspDTI	ATGAA	2 cut(s)	17, 846
TspGWI	ACGGA	2 cut(s)	596, 1307
TspRI	CASTG	6 cut(s)	556, 652, 789, 907, 1500, 1512
Vha464I	CTTAAG	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	1491
VpaK11BI	GGWCC	2 cut(s)	64, 468
XapI	RAATTY	2 cut(s)	669, 716
XhoI	CTCGAG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	1137
XspI	CTAG	2 cut(s)	1391, 1460
ZrmI	AGTACT	2 cut(s)	770, 1127
Zsp2I	ATGCAT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.