Rorug01G0349700
MYB Family

Coronatine-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004441
Physical Location & Seq
Forward (+)
46757894 .. 46763133
5240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0349700.1

Sequence Viewer

Length: 888 bp
ATGATTTGTTCAAGGTTGCTGTTAGTCAGCCAAAAGTGCCACCGGGTATGTCGTGTGGATCCCAAGTCCATTGTGTGCGAGTTTTTCAAGGCCGGGCAGTGTACTAAAGGATTCAAGTGCAAGTTTTCTCATGATTTGAATGTCCAGAGGAAGGGTGAAAAGATTGACATTTACAGCGATAAGCGCGATGATGAAACAATGGAGGAGTGGGATCAAGAGATGTTGGAAAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCATAATAAGCCCACTGAGATTGTTTGCAAGTTCTTCTTGGAGGCAGTCGAAAAGAAACAGTATGGTTGGTTCTGGGTTTGTCCAAACGGTAGCAAAGAGTGCCACTACCGACATGCTCTTCCTCCGGGCTATATTTTGAAGTCTCAGATGAAGGCACTTCTTGAGGAAGAATCTCACAAGATTGCCATTGAGGACGAGATTGAAAACCAGCGTGCTAAAGTAACAACATGTACTCCAATGACTACTGAGTTGTTCATGCAATGGAGGAATAAGAAGACAGAAGAGAAAGAAGCTGGCCTGGCTGCACAACGAGCAGATAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTGCGGATGCAAGCTTGTTTGTGGATGATGCTGAAGCATATGAAAAATACCAAAGACAAGAAGAACGTGAAGCTTCTGAAGAGAAGATCAAAGGCAACTCTGCAGCAGTGGGACCAAGTAGCTCTACTAGTGCCGCTGGTTCTGAAGAAGTACCCGTTGATGATGAGGACGATGACGATGAGTTGGACTTGGATGAGTTAAATGAACTTGAAGCAAGTTTGTCAAGAACATCGATTCAGATACGGGAACCGGGAATAGAGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box-like

Protein Analysis

295

Amino Acids

33.87

Weight (kDa)

4.97

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 147 - 227 2.7e-17 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AciI CCGC 3 cut(s) 595, 623, 753
AclWI GGATC 3 cut(s) 53, 66, 219
AcuI CTGAAG 3 cut(s) 672, 717, 783
AfaI GTAC 3 cut(s) 103, 493, 771
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 7 cut(s) 12, 88, 115, 139, 400, 464, 830
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 4 cut(s) 554, 633, 692, 741
AluI AGCT 4 cut(s) 554, 633, 692, 741
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 53, 66, 219
AoxI GGCC 2 cut(s) 90, 556
ApeKI GCWGC 2 cut(s) 563, 722
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 4 cut(s) 44, 94, 387, 870
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 731
BamHI GGATCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 550, 734
BciT130I CCWGG 1 cut(s) 560
BcnI CCSGG 4 cut(s) 44, 94, 387, 870
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 3 cut(s) 564, 723, 753
BlsI GCNGC 3 cut(s) 565, 724, 754
Bme1390I CCNGG 5 cut(s) 44, 94, 387, 560, 870
Bme18I GGWCC 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 3 cut(s) 60, 732, 867
BmrFI CCNGG 5 cut(s) 44, 94, 387, 560, 870
BmsI GCATC 2 cut(s) 616, 637
BpiI GAAGAC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 4 cut(s) 44, 94, 387, 870
Bsa29I ATCGAT 1 cut(s) 851
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 560
BseCI ATCGAT 1 cut(s) 851
BseGI GGATG 3 cut(s) 631, 649, 817
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 3 cut(s) 267, 419, 498
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 550, 734
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 92, 558
BshVI ATCGAT 1 cut(s) 851
BsiSI CCGG 4 cut(s) 43, 93, 386, 869
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 744
BsnI GGCC 2 cut(s) 92, 558
Bsp143I GATC 3 cut(s) 58, 211, 705
BspACI CCGC 3 cut(s) 595, 623, 753
BspANI GGCC 2 cut(s) 92, 558
BspCNI CTCAG 3 cut(s) 268, 418, 499
BspDI ATCGAT 1 cut(s) 851
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 60, 732, 867
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 3 cut(s) 53, 66, 219
BspQI GCTCTTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 527
BssMI GATC 3 cut(s) 58, 211, 705
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 321, 350
Bst6I CTCTTC 3 cut(s) 384, 537, 693
BstAPI GCANNNNNTGC 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 474, 556, 631
BstDEI CTNAG 4 cut(s) 276, 405, 507, 585
BstF5I GGATG 3 cut(s) 631, 649, 817
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 61, 214, 708
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 3 cut(s) 58, 211, 705
BstMWI GCNNNNNNNGC 6 cut(s) 36, 183, 360, 560, 572, 581
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 2 cut(s) 377, 492
BstSCI CCNGG 5 cut(s) 42, 92, 385, 558, 868
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 550, 734
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 851
BsuRI GGCC 2 cut(s) 92, 558
BsuTUI ATCGAT 1 cut(s) 851
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 3 cut(s) 631, 649, 817
BtsI GCAGTG 2 cut(s) 104, 732
BtsIMutI CAGTG 3 cut(s) 104, 273, 732
Cac8I GCNNGC 3 cut(s) 474, 556, 631
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 731
ClaI ATCGAT 1 cut(s) 851
Csp6I GTAC 3 cut(s) 102, 492, 770
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 5 cut(s) 131, 374, 489, 517, 598
CviQI GTAC 3 cut(s) 102, 492, 770
DdeI CTNAG 4 cut(s) 276, 405, 507, 585
DpnI GATC 3 cut(s) 60, 213, 707
DpnII GATC 3 cut(s) 58, 211, 705
Eam1104I CTCTTC 3 cut(s) 384, 537, 693
EarI CTCTTC 3 cut(s) 384, 537, 693
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 3 cut(s) 672, 717, 783
EcoRII CCWGG 1 cut(s) 558
FaeI CATG 5 cut(s) 134, 377, 492, 520, 601
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 1 cut(s) 744
FatI CATG 5 cut(s) 130, 373, 488, 516, 597
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 564, 723, 753
FokI GGATG 3 cut(s) 638, 656, 824
Fsp4HI GCNGC 3 cut(s) 564, 723, 753
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 564, 723, 753
HaeIII GGCC 2 cut(s) 92, 558
HapII CCGG 4 cut(s) 43, 93, 386, 869
HhaI GCGC 1 cut(s) 186
Hin1II CATG 5 cut(s) 134, 377, 492, 520, 601
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 631, 690
HinfI GANTC 4 cut(s) 111, 239, 431, 853
HpaII CCGG 4 cut(s) 43, 93, 386, 869
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 4 cut(s) 408, 697, 763, 858
Hpy188III TCNNGA 7 cut(s) 131, 145, 215, 422, 608, 843, 885
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 145, 406
HpyCH4III ACNGT 2 cut(s) 321, 350
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 6 cut(s) 120, 288, 520, 566, 629, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 183, 360, 560, 572, 581
HpyF3I CTNAG 4 cut(s) 276, 405, 507, 585
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 5 cut(s) 134, 377, 492, 520, 601
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 58, 211, 705
LguI GCTCTTC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 550, 734
LweI GCATC 2 cut(s) 616, 637
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 481
MalI GATC 3 cut(s) 60, 213, 707
MboI GATC 3 cut(s) 58, 211, 705
MflI RGATCY 1 cut(s) 58
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 204, 783
MnlI CCTC 9 cut(s) 141, 196, 295, 393, 418, 445, 519, 778, 871
MseI TTAA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 4 cut(s) 43, 93, 386, 869
MspR9I CCNGG 5 cut(s) 44, 94, 387, 560, 870
MvaI CCWGG 1 cut(s) 560
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 6 cut(s) 36, 183, 360, 560, 572, 581
NciI CCSGG 4 cut(s) 44, 94, 387, 870
NdeI CATATG 1 cut(s) 658
NdeII GATC 3 cut(s) 58, 211, 705
NlaIII CATG 5 cut(s) 134, 377, 492, 520, 601
NlaIV GGNNCC 3 cut(s) 60, 732, 867
NspI RCATGY 2 cut(s) 377, 492
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 384
PfeI GAWTC 3 cut(s) 111, 431, 853
PkrI GCNGC 3 cut(s) 565, 724, 754
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 3 cut(s) 60, 732, 867
PspPI GGNCC 1 cut(s) 731
PsrI GAACNNNNNNTAC 2 cut(s) 314, 346
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 3 cut(s) 103, 493, 771
RsaNI GTAC 3 cut(s) 102, 492, 770
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 818
SatI GCNGC 3 cut(s) 564, 723, 753
Sau3AI GATC 3 cut(s) 58, 211, 705
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 5 cut(s) 44, 94, 387, 560, 870
SetI ASST 7 cut(s) 17, 234, 556, 635, 688, 694, 743
SfaNI GCATC 2 cut(s) 616, 637
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SpeI ACTAGT 1 cut(s) 746
SsiI CCGC 3 cut(s) 595, 623, 753
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 5 cut(s) 42, 92, 385, 558, 868
TaaI ACNGT 2 cut(s) 321, 350
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 309, 851
TatI WGTACW 2 cut(s) 101, 491
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 3 cut(s) 111, 431, 853
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TscAI CASTG 3 cut(s) 104, 280, 732
TseI GCWGC 2 cut(s) 563, 722
TspDTI ATGAA 5 cut(s) 207, 425, 505, 675, 837
TspRI CASTG 3 cut(s) 104, 280, 732
VpaK11BI GGWCC 1 cut(s) 731
XceI RCATGY 2 cut(s) 377, 492
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.