Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268097.1

Orthogroup ID

OG0004441

Physical Location & Seq

Genomic Coordinates Reverse (-)

218 .. 706

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggatatttgctcttccggtcaagggtaccttgtcagtgctggccccgctatttcaactggcattcctcccttgcactcaaaccttatgaatccattgattcctcaaactgattctatgttggagaagggtgctagagagactctgcgtcggctgctcataagtggttcaacccagagtagctcaccgctgatggatgtattacctgccatgctaacaaatgcagatgagaatagaaatatgcttgtttctgggagccgtggtctatacactggaaccagcgacgttgatgtaattgcaaatagcattgcagccatgagtatggtttcactgcctgggatatctactggtggaactgttttggagaattgtggcagcagcaatggttttgacatacaggatgagggatctagtggattgggtggatcctgtttggaagatcagggtaccttctgttcgaattatgggatgaaaaggactgatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

16.77

Weight (kDa)

4.34

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950
fragaria_vesca	FvH4_7g24020 FvH4_7g24020 FvH4_7g24020
malus_domestica	MD01G1147200.v1.1
prunus_persica	Prupe.2G246100_v2.0.a1
pyrus_communis	pycom01g16620 pycom07g19650 pycom07g19670
rosa_chinensis	RchiOBHm_Chr1g0369361 RchiOBHm_Chr1g0369401
rosa_laevigata	RLG00000027133
rosa_multiflora	Rmu_co8268097.1_g000001 Rmu_sc0003612.1_g000020 Rmu_sc0006332.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287680
rosa_rugosa	Rorug01G0349700 Rorug01G0349800
rosa_samantha	Rh1AG357200 Rh1AG357400 Rh1BG321400 Rh1CG335300 Rh1DG352100
rosa_wichuraiana	Rw1G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
Acc65I	GGTACC	2 cut(s)	27, 446
AccB1I	GGYRCC	2 cut(s)	27, 446
AciI	CCGC	2 cut(s)	48, 188
AclWI	GGATC	3 cut(s)	415, 420, 433
AfaI	GTAC	2 cut(s)	29, 448
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	57, 171
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	415, 420, 433
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	4 cut(s)	154, 311, 375, 378
Asp718I	GGTACC	2 cut(s)	27, 446
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	27, 446
BbvI	GCAGC	4 cut(s)	141, 323, 387, 390
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	135, 411
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	4 cut(s)	155, 312, 376, 379
BlsI	GCNGC	4 cut(s)	156, 313, 377, 380
Bme1390I	CCNGG	1 cut(s)	336
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	6 cut(s)	29, 46, 257, 277, 427, 448
BmrFI	CCNGG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	259, 335
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	3 cut(s)	64, 277, 352
Bse3DI	GCAATG	2 cut(s)	306, 388
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	259, 335
BseGI	GGATG	3 cut(s)	202, 406, 474
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	306, 388
BseNI	ACTGG	3 cut(s)	64, 277, 352
BseXI	GCAGC	4 cut(s)	141, 323, 387, 390
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	27, 446
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	407, 425, 439
BspACI	CCGC	2 cut(s)	48, 188
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	6 cut(s)	29, 46, 257, 277, 427, 448
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	3 cut(s)	415, 420, 433
BspQI	GCTCTTC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	27, 446
BsrDI	GCAATG	2 cut(s)	306, 388
BsrI	ACTGG	3 cut(s)	64, 277, 352
BssECI	CCNNGG	2 cut(s)	259, 335
BssMI	GATC	3 cut(s)	407, 425, 439
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	202, 406, 474
BstKTI	GATC	3 cut(s)	410, 428, 442
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	407, 425, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 154
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	141, 323, 387, 390
BstX2I	RGATCY	2 cut(s)	407, 425
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	2 cut(s)	407, 425
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	202, 406, 474
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	3 cut(s)	43, 270, 329
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	28, 447
CviAII	CATG	2 cut(s)	211, 316
CviJI	RGCY	5 cut(s)	45, 154, 183, 258, 314
CviKI_1	RGCY	5 cut(s)	45, 154, 183, 258, 314
CviQI	GTAC	2 cut(s)	28, 447
DpnI	GATC	3 cut(s)	409, 427, 441
DpnII	GATC	3 cut(s)	407, 425, 439
DriI	GACNNNNNGTC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	342
FaeI	CATG	2 cut(s)	214, 319
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	2 cut(s)	210, 315
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	155, 312, 376, 379
FokI	GGATG	3 cut(s)	209, 413, 481
Fsp4HI	GCNGC	4 cut(s)	155, 312, 376, 379
FspBI	CTAG	2 cut(s)	135, 411
GluI	GCNGC	4 cut(s)	155, 312, 376, 379
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	214, 319
HinfI	GANTC	4 cut(s)	91, 100, 113, 142
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	177
Hpy99I	CGWCG	2 cut(s)	153, 287
HpyAV	CCTTC	2 cut(s)	121, 460
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	76, 224, 299, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 154
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	214, 319
KpnI	GGTACC	2 cut(s)	31, 450
Kzo9I	GATC	3 cut(s)	407, 425, 439
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	4 cut(s)	141, 323, 387, 390
MaeI	CTAG	2 cut(s)	135, 411
MaeII	ACGT	1 cut(s)	285
MalI	GATC	3 cut(s)	409, 427, 441
MboI	GATC	3 cut(s)	407, 425, 439
MboII	GAAGA	2 cut(s)	6, 449
MflI	RGATCY	2 cut(s)	407, 425
MluCI	AATT	3 cut(s)	294, 367, 460
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	78, 114, 397
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	47, 154
NdeII	GATC	3 cut(s)	407, 425, 439
NlaIII	CATG	2 cut(s)	214, 319
NlaIV	GGNNCC	6 cut(s)	29, 46, 257, 277, 427, 448
NspV	TTCGAA	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	91, 100, 113
PkrI	GCNGC	4 cut(s)	156, 313, 377, 380
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	6 cut(s)	29, 46, 257, 277, 427, 448
PspPI	GGNCC	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
PsuI	RGATCY	2 cut(s)	407, 425
RsaI	GTAC	2 cut(s)	29, 448
RsaNI	GTAC	2 cut(s)	28, 447
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	19
SatI	GCNGC	4 cut(s)	155, 312, 376, 379
Sau3AI	GATC	3 cut(s)	407, 425, 439
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	6 cut(s)	33, 87, 185, 208, 288, 452
SfuI	TTCGAA	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	294, 367, 460
SsiI	CCGC	2 cut(s)	48, 188
SspMI	CTAG	2 cut(s)	135, 411
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	294, 367, 460
TfiI	GAWTC	3 cut(s)	91, 100, 113
TscAI	CASTG	3 cut(s)	43, 277, 336
TseI	GCWGC	4 cut(s)	154, 311, 375, 378
TspDTI	ATGAA	2 cut(s)	104, 485
TspRI	CASTG	3 cut(s)	43, 277, 336
XspI	CTAG	2 cut(s)	135, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.