Rmu_sc0006332.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006332.1
Physical Location & Seq
Forward (+)
6337 .. 11652
5316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006332.1_g000003.1.cds

Sequence Viewer

Length: 1692 bp
atgtacacacttgagatagcaagtgcagaccccaaatctatttctgcaaatccaccagtacagtttaccaaaagtgtcaccaagtggttcaccaaggacggaattttggtggagggcctcttctggaaagacgttgaagcgctgatcgacgattaccagaaagaaccaaagaagggcaagggtaatttgaatcttacagtcttgccaacatccgatctacgtctttcatttgttggggatgatggccatacagatagactattcaccttaaatagcaaatcccagtgctctgctgtagaagtcaatgagattccagcagacaattctggccggtctttcattatcaaaatcccagatggtcgggtttttcacttttggtgctctgagacttcaaagcttttgggaattgaattgatttcaaagatgaaggatctgatcaggaggaagccctctattgccgagttaactggaatcagcgagtcacgtcttggttgctttgcaactcaccttcgtgcctatctggtgggatcaacagtggttggaagcggatcaagttctgcaccctcaaatactgatgttaatacctccaatatggagctatttgatacagctcaagatggacaactctcgtcaacatcatcaaagtcgctgcgttctcgacatagtgtgaatcagtcaatgaaggcaaattcatcgtttcagggtagcctgagtccaaggtcaagctctttcaaagagggtctccccagaaccttgtcgtccctgaggaatatatccagggaaaagttgaggaggcgaggggacatttatctttcagcggtcgatgacccaacaatcgtttcaccagtggcaatcaatgcatcttgttcaaatcaatctgaaaatgacaagtgtgtagaagttgtcgcaagttgctcattatcttcatcaagttttctggagtcacttggaaaattgactgtccaaccaaccctgaactctgcatctcaaattccatacatggctactcctcttttgtccccttactactgttggtgccctcccggatcatcggcaaaacctccacttaatttggcagattgtcccctgttggatttccctgcctttcttccagacccactcatccggttgccaaggccaacttctcagcagatcccaaccttcaatcctttgatttgtgattcgattgttcacattcctgttatggatatttgctcttccggtcaagggtaccttgtcagtgctggccccgctatttcaactggcattcctcccttgcactcaaaccttatgaatccattgattcctcaaactgattctatgttggagaagggtgctagagagactctgcgtcggctgctcataagtggttcaacccagagtagctcaccgctgatggatgtattacctgccatgctaacaaatgcagatgagaatagaaatatgcttgttgctgggagccgtggtctatacactggaaccagcgacgttgatgtaattgcaaatagcattgcagccatgagtatggtttcactgcctgggatatctactggtggaactgttttggagaattgtggcagcagcaatggttttgacatacaggatgagggatctagtggattgggtggatcctgtttggaagatcagggtaccttctgttcgaattatgggatgaaaaggactgatgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

563

Amino Acids

60.4

Weight (kDa)

5.57

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1417
Acc65I GGTACC 2 cut(s) 1230, 1649
AccB1I GGYRCC 3 cut(s) 1035, 1230, 1649
AciI CCGC 4 cut(s) 546, 818, 1251, 1391
AclWI GGATC 8 cut(s) 438, 535, 556, 1054, 1147, 1618, 1623, 1636
AcoI YGGCCR 2 cut(s) 244, 328
AcsI RAATTY 3 cut(s) 102, 688, 990
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 4 cut(s) 5, 60, 1232, 1651
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 173, 1227
AhdI GACNNNNNGTC 1 cut(s) 1350
AjiI CACGTC 1 cut(s) 485
AjnI CCWGG 2 cut(s) 776, 1537
AjuI GAANNNNNNNTTGG 4 cut(s) 823, 855, 1126, 1158
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 5 cut(s) 397, 598, 611, 726, 1386
AluI AGCT 5 cut(s) 397, 598, 611, 726, 1386
Alw21I GWGCWC 2 cut(s) 290, 383
Alw26I GTCTC 3 cut(s) 380, 746, 1337
AlwI GGATC 8 cut(s) 438, 535, 556, 1054, 1147, 1618, 1623, 1636
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 5 cut(s) 115, 244, 328, 1136, 1246
ApeKI GCWGC 5 cut(s) 649, 1357, 1514, 1578, 1581
ApoI RAATTY 3 cut(s) 102, 688, 990
Asp718I GGTACC 2 cut(s) 1230, 1649
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 115, 1247
AsuC2I CCSGG 1 cut(s) 1044
AsuHPI GGTGA 6 cut(s) 70, 82, 256, 497, 834, 1380
AsuII TTCGAA 1 cut(s) 1661
AxyI CCTNAGG 1 cut(s) 764
BaeGI GKGCMC 1 cut(s) 1040
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 1628
BanI GGYRCC 3 cut(s) 1035, 1230, 1649
Bbv12I GWGCWC 2 cut(s) 290, 383
BbvI GCAGC 5 cut(s) 636, 1344, 1526, 1590, 1593
BccI CCATC 4 cut(s) 236, 350, 611, 1390
BceAI ACGGC 1 cut(s) 1446
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 2 cut(s) 778, 1539
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 1 cut(s) 1044
BcoDI GTCTC 3 cut(s) 380, 746, 1337
BfaI CTAG 2 cut(s) 1338, 1614
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 1417
BisI GCNGC 5 cut(s) 650, 1358, 1515, 1579, 1582
BlsI GCNGC 5 cut(s) 651, 1359, 1516, 1580, 1583
Bme1390I CCNGG 3 cut(s) 778, 1044, 1539
BmeRI GACNNNNNGTC 1 cut(s) 1350
BmgBI CACGTC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 115, 1247
BmiI GGNNCC 7 cut(s) 1037, 1232, 1249, 1460, 1480, 1630, 1651
BmrFI CCNGG 3 cut(s) 778, 1044, 1539
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 869, 992
BmuI ACTGGG 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 959
Bpu14I TTCGAA 1 cut(s) 1661
BpuEI CTTGAG 2 cut(s) 32, 597
BpuMI CCSGG 1 cut(s) 1044
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 6 cut(s) 93, 716, 777, 1133, 1462, 1538
BsaWI WCCGGW 2 cut(s) 1125, 1220
BsaXI ACNNNNNCTCC 2 cut(s) 1450, 1480
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 1227
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 7 cut(s) 56, 283, 472, 845, 1267, 1480, 1555
Bse21I CCTNAGG 1 cut(s) 764
Bse3DI GCAATG 2 cut(s) 1509, 1591
BseBI CCWGG 2 cut(s) 778, 1539
BseDI CCNNGG 6 cut(s) 93, 716, 777, 1133, 1462, 1538
BseGI GGATG 6 cut(s) 209, 244, 1122, 1405, 1609, 1677
BseLI CCNNNNNNNGG 2 cut(s) 173, 1227
BseMI GCAATG 2 cut(s) 1509, 1591
BseMII CTCAG 4 cut(s) 375, 701, 755, 1160
BseNI ACTGG 7 cut(s) 56, 283, 472, 845, 1267, 1480, 1555
BseRI GAGGAG 2 cut(s) 805, 999
BseSI GKGCMC 1 cut(s) 1040
BseXI GCAGC 5 cut(s) 636, 1344, 1526, 1590, 1593
BseYI CCCAGC 1 cut(s) 1454
BsgI GTGCAG 2 cut(s) 45, 543
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 5 cut(s) 117, 246, 330, 1138, 1248
BshNI GGYRCC 3 cut(s) 1035, 1230, 1649
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 2 cut(s) 290, 383
BsiSI CCGG 4 cut(s) 331, 1044, 1126, 1221
BslFI GGGAC 4 cut(s) 745, 815, 1003, 1068
BslI CCNNNNNNNGG 2 cut(s) 173, 1227
BsmAI GTCTC 3 cut(s) 380, 746, 1337
BsmFI GGGAC 4 cut(s) 745, 815, 1003, 1068
BsmI GAATGC 1 cut(s) 1266
BsnI GGCC 5 cut(s) 117, 246, 330, 1138, 1248
Bso31I GGTCTC 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 1661
Bsp1286I GDGCHC 3 cut(s) 290, 383, 1040
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 4 cut(s) 546, 818, 1251, 1391
BspANI GGCC 5 cut(s) 117, 246, 330, 1138, 1248
BspCNI CTCAG 4 cut(s) 376, 702, 756, 1159
BspLI GGNNCC 7 cut(s) 1037, 1232, 1249, 1460, 1480, 1630, 1651
BspMI ACCTGC 1 cut(s) 1417
BspPI GGATC 8 cut(s) 438, 535, 556, 1054, 1147, 1618, 1623, 1636
BspQI GCTCTTC 1 cut(s) 1222
BspT104I TTCGAA 1 cut(s) 1661
BspT107I GGYRCC 3 cut(s) 1035, 1230, 1649
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 1509, 1591
BsrFI RCCGGY 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 7 cut(s) 56, 283, 472, 845, 1267, 1480, 1555
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 6 cut(s) 93, 716, 777, 1133, 1462, 1538
BssT1I CCWWGG 3 cut(s) 93, 716, 1133
Bst2UI CCWGG 2 cut(s) 778, 1539
Bst4CI ACNGT 6 cut(s) 63, 199, 535, 961, 1031, 1561
Bst6I CTCTTC 2 cut(s) 125, 1222
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 1661
BstC8I GCNNGC 1 cut(s) 1246
BstDEI CTNAG 4 cut(s) 384, 710, 764, 1146
BstDSI CCRYGG 1 cut(s) 1462
BstF5I GGATG 6 cut(s) 209, 244, 1122, 1405, 1609, 1677
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstMAI GTCTC 3 cut(s) 380, 746, 1337
BstMCI CGRYCG 1 cut(s) 822
BstMWI GCNNNNNNNGC 3 cut(s) 857, 1250, 1357
BstNI CCWGG 2 cut(s) 778, 1539
BstSCI CCNGG 3 cut(s) 776, 1042, 1537
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 1040
BstV1I GCAGC 5 cut(s) 636, 1344, 1526, 1590, 1593
BstX2I RGATCY 4 cut(s) 430, 1152, 1610, 1628
BstXI CCANNNNNNTGG 1 cut(s) 1525
BstYI RGATCY 4 cut(s) 430, 1152, 1610, 1628
Bsu36I CCTNAGG 1 cut(s) 764
BsuRI GGCC 5 cut(s) 117, 246, 330, 1138, 1248
BtgI CCRYGG 1 cut(s) 1462
BtrI CACGTC 1 cut(s) 485
BtsCI GGATG 6 cut(s) 209, 244, 1122, 1405, 1609, 1677
BtsI GCAGTG 1 cut(s) 1532
BtsIMutI CAGTG 6 cut(s) 290, 540, 852, 1246, 1473, 1532
BveI ACCTGC 1 cut(s) 1417
Cac8I GCNNGC 1 cut(s) 1246
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 115, 1247
CseI GACGC 1 cut(s) 1340
Csp6I GTAC 4 cut(s) 4, 59, 1231, 1650
CspCI CAANNNNNGTGG 2 cut(s) 1053, 1088
CviAII CATG 3 cut(s) 1000, 1414, 1519
CviQI GTAC 4 cut(s) 4, 59, 1231, 1650
DdeI CTNAG 4 cut(s) 384, 710, 764, 1146
DraIII CACNNNGTG 1 cut(s) 84
DriI GACNNNNNGTC 1 cut(s) 1350
EaeI YGGCCR 2 cut(s) 244, 328
Eam1104I CTCTTC 2 cut(s) 125, 1222
Eam1105I GACNNNNNGTC 1 cut(s) 1350
EarI CTCTTC 2 cut(s) 125, 1222
Eco130I CCWWGG 3 cut(s) 93, 716, 1133
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 1545
Eco47III AGCGCT 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 776, 1537
EcoRV GATATC 1 cut(s) 1545
EcoT14I CCWWGG 3 cut(s) 93, 716, 1133
EcoT22I ATGCAT 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 93, 716, 1133
FaeI CATG 3 cut(s) 1003, 1417, 1522
FalI AAGNNNNNCTT 4 cut(s) 1126, 1158, 1218, 1250
FaqI GGGAC 4 cut(s) 745, 815, 1003, 1068
FatI CATG 3 cut(s) 999, 1413, 1518
FauI CCCGC 1 cut(s) 1258
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 5 cut(s) 650, 1358, 1515, 1579, 1582
FokI GGATG 6 cut(s) 196, 251, 1109, 1412, 1616, 1684
Fsp4HI GCNGC 5 cut(s) 650, 1358, 1515, 1579, 1582
FspBI CTAG 2 cut(s) 1338, 1614
GlaI GCGC 1 cut(s) 141
GluI GCNGC 5 cut(s) 650, 1358, 1515, 1579, 1582
GsaI CCCAGC 1 cut(s) 1458
GsuI CTGGAG 1 cut(s) 959
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 5 cut(s) 117, 246, 330, 1138, 1248
HapII CCGG 4 cut(s) 331, 1044, 1126, 1221
HgaI GACGC 1 cut(s) 1340
HhaI GCGC 1 cut(s) 142
Hin1II CATG 3 cut(s) 1003, 1417, 1522
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 2 cut(s) 465, 633
HindII GTYRAC 2 cut(s) 465, 633
HindIII AAGCTT 1 cut(s) 395
HpaI GTTAAC 1 cut(s) 465
HpaII CCGG 4 cut(s) 331, 1044, 1126, 1221
HphI GGTGA 6 cut(s) 70, 82, 256, 497, 834, 1380
Hpy166II GTNNAC 6 cut(s) 6, 66, 90, 465, 633, 1192
Hpy188I TCNGA 4 cut(s) 214, 385, 435, 880
Hpy188III TCNNGA 6 cut(s) 124, 439, 614, 657, 938, 1112
Hpy8I GTNNAC 6 cut(s) 6, 66, 90, 465, 633, 1192
Hpy99I CGWCG 3 cut(s) 152, 1356, 1490
HpyAV CCTTC 7 cut(s) 166, 421, 518, 676, 1171, 1324, 1663
HpyCH4III ACNGT 6 cut(s) 63, 199, 535, 961, 1031, 1561
HpyCH4IV ACGT 4 cut(s) 132, 220, 484, 1488
HpyF10VI GCNNNNNNNGC 3 cut(s) 857, 1250, 1357
HpyF3I CTNAG 4 cut(s) 384, 710, 764, 1146
HpySE526I ACGT 4 cut(s) 132, 220, 484, 1488
Hsp92II CATG 3 cut(s) 1003, 1417, 1522
HspAI GCGC 1 cut(s) 140
KpnI GGTACC 2 cut(s) 1234, 1653
Ksp22I TGATCA 1 cut(s) 435
KspAI GTTAAC 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 1222
LmnI GCTCC 2 cut(s) 595, 1458
Lsp1109I GCAGC 5 cut(s) 636, 1344, 1526, 1590, 1593
LweI GCATC 2 cut(s) 869, 992
MaeI CTAG 2 cut(s) 1338, 1614
MaeII ACGT 4 cut(s) 132, 220, 484, 1488
MaeIII GTNAC 3 cut(s) 76, 480, 942
MboII GAAGA 5 cut(s) 112, 915, 1100, 1209, 1652
MflI RGATCY 4 cut(s) 430, 1152, 1610, 1628
MhlI GDGCHC 3 cut(s) 290, 383, 1040
MlsI TGGCCA 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 4 cut(s) 488, 721, 950, 1339
MmeI TCCRAC 4 cut(s) 520, 988, 1071, 1305
Mox20I TGGCCA 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 862
MscI TGGCCA 1 cut(s) 246
MseI TTAA 4 cut(s) 269, 464, 579, 1068
MslI CAYNNNNRTG 2 cut(s) 510, 1523
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 818, 1393
MspI CCGG 4 cut(s) 331, 1044, 1126, 1221
MspR9I CCNGG 3 cut(s) 778, 1044, 1539
Mva1269I GAATGC 1 cut(s) 1266
MvaI CCWGG 2 cut(s) 778, 1539
MwoI GCNNNNNNNGC 3 cut(s) 857, 1250, 1357
NciI CCSGG 1 cut(s) 1044
NlaIII CATG 3 cut(s) 1003, 1417, 1522
NlaIV GGNNCC 7 cut(s) 1037, 1232, 1249, 1460, 1480, 1630, 1651
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 3 cut(s) 76, 480, 942
NsiI ATGCAT 1 cut(s) 862
NspV TTCGAA 1 cut(s) 1661
OliI CACNNNNGTG 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 1222
PctI GAATGC 1 cut(s) 1266
PfeI GAWTC 8 cut(s) 190, 310, 471, 670, 1181, 1294, 1303, 1316
PfoI TCCNGGA 1 cut(s) 1042
PkrI GCNGC 5 cut(s) 651, 1359, 1516, 1580, 1583
PleI GAGTC 4 cut(s) 487, 720, 949, 1339
PpsI GAGTC 4 cut(s) 487, 720, 949, 1339
Psp6I CCWGG 2 cut(s) 776, 1537
PspFI CCCAGC 1 cut(s) 1454
PspGI CCWGG 2 cut(s) 776, 1537
PspN4I GGNNCC 7 cut(s) 1037, 1232, 1249, 1460, 1480, 1630, 1651
PspPI GGNCC 2 cut(s) 115, 1247
PsrI GAACNNNNNNTAC 2 cut(s) 1642, 1674
PsuI RGATCY 4 cut(s) 430, 1152, 1610, 1628
RsaI GTAC 4 cut(s) 5, 60, 1232, 1651
RsaNI GTAC 4 cut(s) 4, 59, 1231, 1650
RseI CAYNNNNRTG 2 cut(s) 510, 1523
SapI GCTCTTC 1 cut(s) 1222
SaqAI TTAA 4 cut(s) 269, 464, 579, 1068
SatI GCNGC 5 cut(s) 650, 1358, 1515, 1579, 1582
Sau96I GGNCC 2 cut(s) 115, 1247
SchI GAGTC 4 cut(s) 488, 721, 950, 1339
ScrFI CCNGG 3 cut(s) 778, 1044, 1539
SduI GDGCHC 3 cut(s) 290, 383, 1040
SfaNI GCATC 2 cut(s) 869, 992
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 1661
SmiMI CAYNNNNRTG 2 cut(s) 510, 1523
SmlI CTYRAG 2 cut(s) 11, 612
SmoI CTYRAG 2 cut(s) 11, 612
SsiI CCGC 4 cut(s) 546, 818, 1251, 1391
SspMI CTAG 2 cut(s) 1338, 1614
StyD4I CCNGG 3 cut(s) 776, 1042, 1537
StyI CCWWGG 3 cut(s) 93, 716, 1133
TaaI ACNGT 6 cut(s) 63, 199, 535, 961, 1031, 1561
TaiI ACGT 4 cut(s) 135, 223, 487, 1491
TaqI TCGA 5 cut(s) 147, 658, 822, 1184, 1661
TatI WGTACW 2 cut(s) 3, 58
TfiI GAWTC 8 cut(s) 190, 310, 471, 670, 1181, 1294, 1303, 1316
Tru1I TTAA 4 cut(s) 269, 464, 579, 1068
Tru9I TTAA 4 cut(s) 269, 464, 579, 1068
TscAI CASTG 6 cut(s) 290, 540, 852, 1246, 1480, 1539
TseFI GTSAC 3 cut(s) 76, 480, 942
TseI GCWGC 5 cut(s) 649, 1357, 1514, 1578, 1581
Tsp45I GTSAC 3 cut(s) 76, 480, 942
TspDTI ATGAA 8 cut(s) 216, 328, 440, 681, 695, 915, 1307, 1688
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 6 cut(s) 290, 540, 852, 1246, 1480, 1539
XapI RAATTY 3 cut(s) 102, 688, 990
XspI CTAG 2 cut(s) 1338, 1614
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.