RLG00000027133

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
8840423 .. 8844873
4451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027133

Sequence Viewer

Length: 1272 bp
ATGACCGGCCATAGAAACGAAGACTTTCACGCTAACGACGAGATCGACGGCGTCGATCGCATTTCCGATCGGTCAAACGCCGAGGAATTCGAGGACTCGTCGGCCGCGAACGAGGTCGGGAGCTCCGGCGAGGGAGCGACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGCGGTTGACAGGGATACTGGTTGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGCGCAGACGAGAGGTTGAAGCCTTTGCTGAAGATGAATGCTTCAAACGATGCCGCAGAAGGTCGGTTGCTGGCTCAATTAACTCAGCATTTTGAGCCCGCGGAAGTTGGAATGCTAGCGAGGTGCTTCTGCATACCACTTGTTTCTGTTCGTGTTGGAAAGATCAACAAACAAGGGATTTTGTTGTGCCCTACCAATTCAAAGGGTAATTTGAATCTTACAGTCTTGCCAACATCCGATCTACGTCTTTCATTTGTTGGGGATGATGGCCATACAGATAGACTATTCACCTTAAATAGCAAATCCCAGTGCTCTGCCGTAGAAGTCAATGAGATTCCAGCAGACAATTCTGGCCGGTCTTTCATTATCAAAATCCCAGATGGTCGGGTTTTTCACTTTTGGTGCTCTGAGACATCAAAGCTTTTGGGAATTGAATTGATTTCAAAGATGAAGGATCTGATCAGGAGGAAGCCCTCTATTGCCGAGTTAACTGGAATCAGCGAATCACGTCTTGGTTGCTTTGCAACTCACCTTCGTGCCTATCTGGTGGGATCAACAGTGGTTGGAAGCGGATCAAGTTCTGCACCCTCAAATACTGATGTTAATACCTCCAATATTGAGCTATTTGATACTTCTCAAGATGGACAACTCTCGTCAACATCATCAAAGTCGCTGCGTTCTCGACATAGTGTGAATCAGTCAATGAAGGCAAATTCATCGTTTCAGGGTAGCCTGAGTCCAAGGTCAAGCTCTTTCAAAGAAGGTCTCCCCAGAACCTTGTCGTCCCTAAGGAATATAACCAGGGAAAAGTTGAGGAGGCGAGGGGACATTTATCTTTCAGCGGTCGATGACCCAACAATCGTTTCACCAGTGGCAATCAATGCATCTTGTTCAAATCAATCTGAAAATGACAAACCCACTCATCCGGTTGCCAAGGCCAACTTCTCAGCAGATCCCAACCTTCAATCCTTTGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

45.83

Weight (kDa)

5.51

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 4 cut(s) 107, 287, 294, 392
AciI CCGC 7 cut(s) 105, 172, 345, 390, 392, 861, 1133
AclWI GGATC 4 cut(s) 753, 850, 871, 1238
AcoI YGGCCR 4 cut(s) 7, 102, 559, 643
AcsI RAATTY 2 cut(s) 86, 1003
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 2 cut(s) 51, 140
AfeI AGCGCT 1 cut(s) 264
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 1 cut(s) 1091
AjuI GAANNNNNNNTTGG 6 cut(s) 786, 818, 1138, 1170, 1217, 1249
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 4 cut(s) 123, 712, 913, 1041
AluI AGCT 4 cut(s) 123, 712, 913, 1041
Alw21I GWGCWC 3 cut(s) 125, 605, 698
Alw26I GTCTC 2 cut(s) 695, 1061
AlwI GGATC 4 cut(s) 753, 850, 871, 1238
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 5 cut(s) 7, 102, 559, 643, 1227
ApeKI GCWGC 3 cut(s) 217, 220, 964
ApoI RAATTY 2 cut(s) 86, 1003
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 3 cut(s) 265, 287, 296
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 571, 812, 1149
AsuNHI GCTAGC 1 cut(s) 406
AvaII GGWCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 1079
BaeGI GKGCMC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 561
BanII GRGCYC 2 cut(s) 125, 390
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 3 cut(s) 125, 605, 698
BbvI GCAGC 3 cut(s) 204, 232, 951
BccI CCATC 3 cut(s) 551, 665, 926
BceAI ACGGC 2 cut(s) 64, 593
BcgI CGANNNNNNTGC 2 cut(s) 990, 1024
BciT130I CCWGG 1 cut(s) 1093
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 750
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 695, 1061
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 177
BglII AGATCT 1 cut(s) 208
BisI GCNGC 5 cut(s) 105, 218, 221, 345, 965
BlsI GCNGC 5 cut(s) 106, 219, 222, 346, 966
Bme1390I CCNGG 2 cut(s) 242, 1093
Bme18I GGWCC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 242, 1093
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 2 cut(s) 331, 1184
BmtI GCTAGC 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 51, 140
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 5 cut(s) 81, 390, 1031, 1092, 1224
BsaWI WCCGGW 1 cut(s) 1216
Bse118I RCCGGY 2 cut(s) 5, 645
Bse1I ACTGG 4 cut(s) 192, 598, 787, 1160
Bse21I CCTNAGG 1 cut(s) 1079
BseBI CCWGG 1 cut(s) 1093
BseDI CCNNGG 5 cut(s) 81, 390, 1031, 1092, 1224
BseGI GGATG 3 cut(s) 524, 559, 1213
BseMII CTCAG 4 cut(s) 389, 690, 1016, 1251
BseNI ACTGG 4 cut(s) 192, 598, 787, 1160
BseRI GAGGAG 1 cut(s) 1120
BseSI GKGCMC 1 cut(s) 482
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 204, 232, 951
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 4 cut(s) 107, 287, 294, 392
Bsh1285I CGRYCG 4 cut(s) 58, 70, 105, 1137
BshFI GGCC 5 cut(s) 9, 104, 561, 645, 1229
BsiEI CGRYCG 4 cut(s) 58, 70, 105, 1137
BsiHKAI GWGCWC 3 cut(s) 125, 605, 698
BsiSI CCGG 5 cut(s) 6, 126, 241, 646, 1217
BslFI GGGAC 3 cut(s) 215, 1060, 1130
BsmAI GTCTC 2 cut(s) 695, 1061
BsmFI GGGAC 3 cut(s) 215, 1060, 1130
BsmI GAATGC 2 cut(s) 334, 408
BsnI GGCC 5 cut(s) 9, 104, 561, 645, 1229
Bso31I GGTCTC 1 cut(s) 1061
Bsp1286I GDGCHC 5 cut(s) 125, 390, 482, 605, 698
BspACI CCGC 7 cut(s) 105, 172, 345, 390, 392, 861, 1133
BspANI GGCC 5 cut(s) 9, 104, 561, 645, 1229
BspCNI CTCAG 4 cut(s) 388, 691, 1017, 1250
BspFNI CGCG 4 cut(s) 107, 287, 294, 392
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 265
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 4 cut(s) 753, 850, 871, 1238
BspQI GCTCTTC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 1061
BsrBI CCGCTC 1 cut(s) 172
BsrFI RCCGGY 2 cut(s) 5, 645
BsrI ACTGG 4 cut(s) 192, 598, 787, 1160
BssAI RCCGGY 2 cut(s) 5, 645
BssECI CCNNGG 5 cut(s) 81, 390, 1031, 1092, 1224
BssNI GRCGYC 2 cut(s) 51, 140
BssT1I CCWWGG 2 cut(s) 1031, 1224
Bst2UI CCWGG 1 cut(s) 1093
Bst4CI ACNGT 2 cut(s) 514, 850
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 2 cut(s) 51, 140
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstC8I GCNNGC 3 cut(s) 363, 390, 408
BstDEI CTNAG 5 cut(s) 375, 699, 1025, 1079, 1237
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 524, 559, 1213
BstFNI CGCG 4 cut(s) 107, 287, 294, 392
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 3 cut(s) 265, 287, 296
BstMAI GTCTC 2 cut(s) 695, 1061
BstMCI CGRYCG 4 cut(s) 58, 70, 105, 1137
BstMWI GCNNNNNNNGC 8 cut(s) 57, 169, 262, 271, 291, 293, 385, 1172
BstNI CCWGG 1 cut(s) 1093
BstSCI CCNGG 2 cut(s) 240, 1091
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 4 cut(s) 107, 287, 294, 392
BstV1I GCAGC 3 cut(s) 204, 232, 951
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 208, 745, 1243
BstYI RGATCY 3 cut(s) 208, 745, 1243
BstZI CGGCCG 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 1079
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 5 cut(s) 9, 104, 561, 645, 1229
BtgI CCRYGG 1 cut(s) 390
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 3 cut(s) 524, 559, 1213
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 4 cut(s) 257, 605, 855, 1167
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 363, 390, 408
CfoI GCGC 3 cut(s) 265, 287, 296
Cfr10I RCCGGY 2 cut(s) 5, 645
Cfr13I GGNCC 1 cut(s) 238
Cfr42I CCGCGG 1 cut(s) 393
CseI GACGC 1 cut(s) 40
DdeI CTNAG 5 cut(s) 375, 699, 1025, 1079, 1237
EaeI YGGCCR 4 cut(s) 7, 102, 559, 643
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 123
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 1031, 1224
Eco24I GRGCYC 2 cut(s) 125, 390
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 1 cut(s) 238
Eco47III AGCGCT 1 cut(s) 264
Eco52I CGGCCG 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 1079
EcoICRI GAGCTC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 1091
EcoT14I CCWWGG 2 cut(s) 1031, 1224
EcoT22I ATGCAT 1 cut(s) 1177
EcoT38I GRGCYC 2 cut(s) 125, 390
ErhI CCWWGG 2 cut(s) 1031, 1224
FaiI YATR 7 cut(s) 12, 272, 281, 425, 564, 978, 1088
FalI AAGNNNNNCTT 2 cut(s) 1217, 1249
FaqI GGGAC 3 cut(s) 215, 1060, 1130
FauI CCCGC 1 cut(s) 397
FbaI TGATCA 1 cut(s) 750
Fnu4HI GCNGC 5 cut(s) 105, 218, 221, 345, 965
FokI GGATG 3 cut(s) 511, 566, 1200
FriOI GRGCYC 2 cut(s) 125, 390
Fsp4HI GCNGC 5 cut(s) 105, 218, 221, 345, 965
FspBI CTAG 1 cut(s) 407
GlaI GCGC 3 cut(s) 264, 286, 295
GluI GCNGC 5 cut(s) 105, 218, 221, 345, 965
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 5 cut(s) 9, 104, 561, 645, 1229
HapII CCGG 5 cut(s) 6, 126, 241, 646, 1217
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 265, 287, 296
Hin1I GRCGYC 2 cut(s) 51, 140
Hin6I GCGC 3 cut(s) 263, 285, 294
HinP1I GCGC 3 cut(s) 263, 285, 294
HincII GTYRAC 3 cut(s) 177, 780, 948
HindII GTYRAC 3 cut(s) 177, 780, 948
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 7 cut(s) 95, 505, 625, 786, 794, 985, 1027
HpaI GTTAAC 1 cut(s) 780
HpaII CCGG 5 cut(s) 6, 126, 241, 646, 1217
HphI GGTGA 3 cut(s) 571, 812, 1149
Hpy166II GTNNAC 3 cut(s) 177, 780, 948
Hpy188I TCNGA 5 cut(s) 67, 529, 700, 750, 1195
Hpy188III TCNNGA 4 cut(s) 118, 754, 929, 972
Hpy8I GTNNAC 3 cut(s) 177, 780, 948
Hpy99I CGWCG 7 cut(s) 41, 50, 56, 103, 142, 145, 148
HpyAV CCTTC 7 cut(s) 188, 344, 736, 833, 991, 1046, 1262
HpyCH4III ACNGT 2 cut(s) 514, 850
HpyCH4IV ACGT 3 cut(s) 140, 535, 799
HpyCH4V TGCA 7 cut(s) 220, 250, 274, 423, 815, 875, 1175
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 169, 262, 271, 291, 293, 385, 1172
HpyF3I CTNAG 5 cut(s) 375, 699, 1025, 1079, 1237
HpySE526I ACGT 3 cut(s) 140, 535, 799
Hsp92I GRCGYC 2 cut(s) 51, 140
HspAI GCGC 3 cut(s) 263, 285, 294
Ksp22I TGATCA 1 cut(s) 750
KspAI GTTAAC 1 cut(s) 780
KspI CCGCGG 1 cut(s) 393
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 120, 128, 134
Lsp1109I GCAGC 3 cut(s) 204, 232, 951
LweI GCATC 2 cut(s) 331, 1184
MaeI CTAG 1 cut(s) 407
MaeII ACGT 3 cut(s) 140, 535, 799
MbiI CCGCTC 1 cut(s) 172
MboII GAAGA 3 cut(s) 32, 179, 334
MflI RGATCY 3 cut(s) 208, 745, 1243
MhlI GDGCHC 5 cut(s) 125, 390, 482, 605, 698
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 8 cut(s) 86, 368, 487, 499, 637, 720, 725, 1003
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 2 cut(s) 89, 1036
MmeI TCCRAC 3 cut(s) 379, 427, 835
Mox20I TGGCCA 1 cut(s) 561
Mph1103I ATGCAT 1 cut(s) 1177
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 561
MseI TTAA 4 cut(s) 371, 584, 779, 894
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 392, 1133
MspI CCGG 5 cut(s) 6, 126, 241, 646, 1217
MspR9I CCNGG 2 cut(s) 242, 1093
Mva1269I GAATGC 2 cut(s) 334, 408
MvaI CCWGG 1 cut(s) 1093
MvnI CGCG 4 cut(s) 107, 287, 294, 392
MwoI GCNNNNNNNGC 8 cut(s) 57, 169, 262, 271, 291, 293, 385, 1172
NciI CCSGG 1 cut(s) 242
NheI GCTAGC 1 cut(s) 406
NmeAIII GCCGAG 2 cut(s) 106, 799
NsiI ATGCAT 1 cut(s) 1177
OliI CACNNNNGTG 1 cut(s) 825
PciSI GCTCTTC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 42, 51, 104
PctI GAATGC 2 cut(s) 334, 408
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 5 cut(s) 505, 625, 786, 794, 985
PflFI GACNNNGTC 2 cut(s) 50, 142
PkrI GCNGC 5 cut(s) 106, 219, 222, 346, 966
Ple19I CGATCG 2 cut(s) 58, 70
PleI GAGTC 2 cut(s) 89, 1035
PpsI GAGTC 2 cut(s) 89, 1035
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 1091
PspPI GGNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 3 cut(s) 208, 745, 1243
PsyI GACNNNGTC 2 cut(s) 50, 142
PvuI CGATCG 2 cut(s) 58, 70
RseI CAYNNNNRTG 1 cut(s) 825
SacI GAGCTC 1 cut(s) 125
SacII CCGCGG 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 371, 584, 779, 894
SatI GCNGC 5 cut(s) 105, 218, 221, 345, 965
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 2 cut(s) 89, 1036
ScrFI CCNGG 2 cut(s) 242, 1093
SduI GDGCHC 5 cut(s) 125, 390, 482, 605, 698
SfaNI GCATC 2 cut(s) 331, 1184
SfcI CTRYAG 1 cut(s) 218
Sfr303I CCGCGG 1 cut(s) 393
SgrBI CCGCGG 1 cut(s) 393
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 927
SmoI CTYRAG 1 cut(s) 927
Sse9I AATT 8 cut(s) 86, 368, 487, 499, 637, 720, 725, 1003
SsiI CCGC 7 cut(s) 105, 172, 345, 390, 392, 861, 1133
SspI AATATT 1 cut(s) 907
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 240, 1091
StyI CCWWGG 2 cut(s) 1031, 1224
TaaI ACNGT 2 cut(s) 514, 850
TaiI ACGT 3 cut(s) 143, 538, 802
TaqI TCGA 5 cut(s) 45, 54, 90, 973, 1137
TaqII GACCGA 1 cut(s) 60
TasI AATT 8 cut(s) 86, 368, 487, 499, 637, 720, 725, 1003
TauI GCSGC 2 cut(s) 107, 347
TfiI GAWTC 5 cut(s) 505, 625, 786, 794, 985
Tru1I TTAA 4 cut(s) 371, 584, 779, 894
Tru9I TTAA 4 cut(s) 371, 584, 779, 894
TscAI CASTG 4 cut(s) 257, 605, 855, 1167
TseI GCWGC 3 cut(s) 217, 220, 964
TspDTI ATGAA 6 cut(s) 341, 531, 643, 755, 996, 1010
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 4 cut(s) 257, 605, 855, 1167
Tth111I GACNNNGTC 2 cut(s) 50, 142
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 2 cut(s) 86, 1003
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 407
ZraI GACGTC 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.