Rorug01G0349800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
46764324 .. 46765598
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0349800.1

Sequence Viewer

Length: 1275 bp
ATGTTTGGAGGAGGTAGGGCAGCGAAGAAGAGTGATAACTCCAAGTACTATGAGATTCTGGGAGTGTCCAAGACTACTTCGGCTGAAGATTTGAAGAAGGCGTACAAGAAAGCCGCCATGAAGAACCATCCTGATAAGGGCGGAGATCCAGAAAAATTTAAAGAGTTGGCTCAGGCTTATGAGGTTCTGAGTGACCCGGAGAAGCGTGAAATTTATGATCAGTATGGTGAGGACGGACTTAAGGAAGGAATGCAACCGGGTGGCCATGACCCATTTGACATCTTCTCCTCTTTCTTTGGTGGTCGTGGCAGCCCATTTGGAGGCATGCCAGGTGGTGGTGGAGGACGGAGACAGAGACAGAGACGTGGAGAAGATGTGGTTCACTCATTGAAGGTCTCTTTCGAAGACCTATATCTTGGGACCTCAAAGAAACTTTCGCTATGTCGCAATGTGTTGTGCTCCAAGTGCAAAGGCAAGGGGTCAAAATCTGGAGCCTCGACCAAGTGTGATGGTTGCAAAGGAACTGGTATGAAGGTCACTATTAGGCATCTTGGACCTTCTATGATTCAACAGATGCAGCATGCTTGCAATGATTGTAAGGGTACTGGAGAGACCATCAGGGCCAAGGACCGCTGTGGACAATGTAAGGGAGAGAAAGTTGTTCAAGAAAAGAAAGTTTTACAGGTCCATGTGGAGAAGGGTATGCAGAATGGACAGAAGATCACATTTCCTGGTGAAGCTGATGAGGCTCCTGACACAGTCACTGGTGATATAGTGTTCGTCATTCAGCAAAAGGAACATCCTAAATTCAAGAGAAAGATGGATGATCTTTTTGTGGAGCACTCTTTGTCACTCACAGATGCTCTATGTGGTTTCCAGTTTGTGCTGAACCATTTGGATGGCAGGCAGCTACTTATCAAATCAAACCCCGGCCAAGTTGTGAAGCCTGATTCGTTTAAGGCCATCAATGATGAGGGTATGCCAATGTACCAGAGGCCATTCATGAAGGGCAAGCTGTACATTCATTTCTCAGTGGACTACCCTGAAACTCTGAGCCTCGAGCAGGTCAAGGCTTTGGAAGCTGCTCTTCCATCAAAGGCATCATCTCGGGATCTGACAGATGTGGAGTTGGATGAGTGTGAGGAGACAACTCTGCATGATGTGAGCATGGAGGAGGAGATGAGAAGGAAACAGCACCAGGCTCATTCGGAGGCGTATGAAGAGGACAACGACATGCCTGGTGGTGCAGAGAGGGTGCAATGTGCACAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

47.01

Weight (kDa)

6.89

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 15 - 73 1.2e-22 DnaJ domain
DnaJ_C PF01556 127 - 348 9e-35 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 153 - 219 1.4e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1054
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 3 cut(s) 114, 141, 631
AclWI GGATC 2 cut(s) 140, 1119
AcoI YGGCCR 2 cut(s) 262, 931
AcsI RAATTY 3 cut(s) 155, 210, 806
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 5 cut(s) 47, 104, 604, 989, 1019
AfiI CCNNNNNNNGG 4 cut(s) 137, 320, 335, 1063
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 5 cut(s) 94, 391, 569, 665, 811
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 4 cut(s) 328, 730, 1197, 1237
AleI CACNNNNGTG 1 cut(s) 1270
AluBI AGCT 4 cut(s) 740, 910, 1015, 1082
AluI AGCT 4 cut(s) 740, 910, 1015, 1082
Alw21I GWGCWC 3 cut(s) 461, 843, 1267
Alw26I GTCTC 6 cut(s) 343, 349, 355, 400, 605, 1139
Alw44I GTGCAC 1 cut(s) 1263
AlwI GGATC 2 cut(s) 140, 1119
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 2 cut(s) 1058, 1107
AoxI GGCC 5 cut(s) 262, 621, 931, 960, 995
ApaLI GTGCAC 1 cut(s) 1263
ApeKI GCWGC 5 cut(s) 20, 309, 577, 907, 1082
ApoI RAATTY 3 cut(s) 155, 210, 806
AspS9I GGNCC 5 cut(s) 420, 554, 621, 628, 685
AsuC2I CCSGG 3 cut(s) 197, 258, 930
AsuHPI GGTGA 3 cut(s) 239, 746, 779
AsuII TTCGAA 1 cut(s) 402
AvaI CYCGRG 2 cut(s) 1058, 1107
AvaII GGWCC 4 cut(s) 420, 554, 628, 685
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 3 cut(s) 461, 843, 1267
BbvI GCAGC 5 cut(s) 32, 321, 589, 919, 1069
BccI CCATC 7 cut(s) 135, 503, 623, 814, 893, 971, 1099
BciT130I CCWGG 4 cut(s) 330, 732, 1199, 1239
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 3 cut(s) 197, 258, 930
BcoDI GTCTC 6 cut(s) 343, 349, 355, 400, 605, 1139
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 1054
BisI GCNGC 6 cut(s) 21, 114, 310, 578, 908, 1083
BlsI GCNGC 6 cut(s) 22, 115, 311, 579, 909, 1084
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 7 cut(s) 197, 258, 330, 732, 930, 1199, 1239
Bme18I GGWCC 4 cut(s) 420, 554, 628, 685
BmeT110I CYCGRG 2 cut(s) 1058, 1107
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 5 cut(s) 420, 554, 621, 628, 685
BmiI GGNNCC 3 cut(s) 421, 493, 750
BmrFI CCNGG 7 cut(s) 197, 258, 330, 732, 930, 1199, 1239
BmsI GCATC 4 cut(s) 556, 564, 850, 1109
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 510, 627
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 402
BpuMI CCSGG 3 cut(s) 197, 258, 930
BsaI GGTCTC 2 cut(s) 400, 605
BsaJI CCNNGG 2 cut(s) 624, 928
BsaXI ACNNNNNCTCC 6 cut(s) 269, 299, 360, 390, 642, 672
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 320, 335, 1063
Bse1I ACTGG 4 cut(s) 529, 610, 769, 877
Bse3DI GCAATG 3 cut(s) 454, 595, 1265
BseBI CCWGG 4 cut(s) 330, 732, 1199, 1239
BseDI CCNNGG 2 cut(s) 624, 928
BseGI GGATG 5 cut(s) 127, 799, 829, 904, 1138
BseLI CCNNNNNNNGG 4 cut(s) 137, 320, 335, 1063
BseMI GCAATG 3 cut(s) 454, 595, 1265
BseMII CTCAG 4 cut(s) 179, 185, 1043, 1044
BseNI ACTGG 4 cut(s) 529, 610, 769, 877
BseRI GAGGAG 5 cut(s) 24, 277, 1157, 1187, 1190
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 5 cut(s) 32, 321, 589, 919, 1069
BsgI GTGCAG 1 cut(s) 1266
BshFI GGCC 5 cut(s) 264, 623, 933, 962, 997
BsiHKAI GWGCWC 3 cut(s) 461, 843, 1267
BsiHKCI CYCGRG 2 cut(s) 1058, 1107
BsiSI CCGG 3 cut(s) 197, 257, 930
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 4 cut(s) 137, 320, 335, 1063
BsmAI GTCTC 6 cut(s) 343, 349, 355, 400, 605, 1139
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 5 cut(s) 264, 623, 933, 962, 997
Bso31I GGTCTC 2 cut(s) 400, 605
BsoBI CYCGRG 2 cut(s) 1058, 1107
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 461, 843, 1267
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 5 cut(s) 145, 217, 720, 826, 1111
BspACI CCGC 3 cut(s) 114, 141, 631
BspANI GGCC 5 cut(s) 264, 623, 933, 962, 997
BspCNI CTCAG 4 cut(s) 180, 184, 1043, 1044
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 3 cut(s) 421, 493, 750
BspMI ACCTGC 1 cut(s) 1054
BspPI GGATC 2 cut(s) 140, 1119
BspQI GCTCTTC 1 cut(s) 1092
BspT104I TTCGAA 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 239
BspTNI GGTCTC 2 cut(s) 400, 605
BsrDI GCAATG 3 cut(s) 454, 595, 1265
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 4 cut(s) 529, 610, 769, 877
BssECI CCNNGG 2 cut(s) 624, 928
BssMI GATC 5 cut(s) 145, 217, 720, 826, 1111
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 4 cut(s) 330, 732, 1199, 1239
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 3 cut(s) 23, 1092, 1215
BstAFI CTTAAG 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 1017
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 5 cut(s) 326, 582, 586, 905, 1013
BstDEI CTNAG 4 cut(s) 171, 188, 1030, 1052
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 5 cut(s) 127, 799, 829, 904, 1138
BstKTI GATC 5 cut(s) 148, 220, 723, 829, 1114
BstMAI GTCTC 6 cut(s) 343, 349, 355, 400, 605, 1139
BstMBI GATC 5 cut(s) 145, 217, 720, 826, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 465, 746, 1079
BstNI CCWGG 4 cut(s) 330, 732, 1199, 1239
BstNSI RCATGY 3 cut(s) 328, 584, 1237
BstSCI CCNGG 7 cut(s) 195, 256, 328, 730, 928, 1197, 1237
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 5 cut(s) 32, 321, 589, 919, 1069
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 2 cut(s) 145, 1111
BstXI CCANNNNNNTGG 1 cut(s) 899
BstYI RGATCY 2 cut(s) 145, 1111
BsuRI GGCC 5 cut(s) 264, 623, 933, 962, 997
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 5 cut(s) 127, 799, 829, 904, 1138
BtsIMutI CAGTG 2 cut(s) 762, 1038
BveI ACCTGC 1 cut(s) 1054
Cac8I GCNNGC 5 cut(s) 326, 582, 586, 905, 1013
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 1002
Cfr13I GGNCC 5 cut(s) 420, 554, 621, 628, 685
Csp6I GTAC 5 cut(s) 46, 103, 603, 988, 1018
CviAII CATG 9 cut(s) 118, 266, 325, 581, 689, 1003, 1157, 1168, 1234
CviQI GTAC 5 cut(s) 46, 103, 603, 988, 1018
DdeI CTNAG 4 cut(s) 171, 188, 1030, 1052
DpnI GATC 5 cut(s) 147, 219, 722, 828, 1113
DpnII GATC 5 cut(s) 145, 217, 720, 826, 1111
DraI TTTAAA 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 262, 931
Eam1104I CTCTTC 3 cut(s) 23, 1092, 1215
EarI CTCTTC 3 cut(s) 23, 1092, 1215
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 624
Eco31I GGTCTC 2 cut(s) 400, 605
Eco47I GGWCC 4 cut(s) 420, 554, 628, 685
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 2 cut(s) 1058, 1107
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 4 cut(s) 328, 730, 1197, 1237
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 9 cut(s) 121, 269, 328, 584, 692, 1006, 1160, 1171, 1237
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 1 cut(s) 433
FatI CATG 9 cut(s) 117, 265, 324, 580, 688, 1002, 1156, 1167, 1233
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 21, 114, 310, 578, 908, 1083
FokI GGATG 5 cut(s) 114, 786, 836, 911, 1145
Fsp4HI GCNGC 6 cut(s) 21, 114, 310, 578, 908, 1083
GluI GCNGC 6 cut(s) 21, 114, 310, 578, 908, 1083
GsuI CTGGAG 2 cut(s) 510, 627
HaeIII GGCC 5 cut(s) 264, 623, 933, 962, 997
HapII CCGG 3 cut(s) 197, 257, 930
Hin1II CATG 9 cut(s) 121, 269, 328, 584, 692, 1006, 1160, 1171, 1237
HinfI GANTC 3 cut(s) 55, 565, 950
HpaII CCGG 3 cut(s) 197, 257, 930
HphI GGTGA 3 cut(s) 239, 746, 779
Hpy166II GTNNAC 4 cut(s) 382, 638, 1036, 1265
Hpy188I TCNGA 4 cut(s) 189, 1053, 1116, 1210
Hpy188III TCNNGA 8 cut(s) 131, 149, 489, 665, 752, 811, 1003, 1109
Hpy8I GTNNAC 4 cut(s) 382, 638, 1036, 1265
HpyAV CCTTC 8 cut(s) 91, 239, 385, 526, 567, 691, 1000, 1179
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 465, 746, 1079
HpyF3I CTNAG 4 cut(s) 171, 188, 1030, 1052
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 9 cut(s) 121, 269, 328, 584, 692, 1006, 1160, 1171, 1237
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 5 cut(s) 145, 217, 720, 826, 1111
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 4 cut(s) 464, 491, 754, 838
Lsp1109I GCAGC 5 cut(s) 32, 321, 589, 919, 1069
LweI GCATC 4 cut(s) 556, 564, 850, 1109
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 4 cut(s) 191, 535, 760, 849
MalI GATC 5 cut(s) 147, 219, 722, 828, 1113
MboI GATC 5 cut(s) 145, 217, 720, 826, 1111
MflI RGATCY 2 cut(s) 145, 1111
MhlI GDGCHC 3 cut(s) 461, 843, 1267
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 3 cut(s) 155, 210, 806
MluNI TGGCCA 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 1110
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 3 cut(s) 159, 240, 957
MslI CAYNNNNRTG 2 cut(s) 897, 1270
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 197, 257, 930
MspR9I CCNGG 7 cut(s) 197, 258, 330, 732, 930, 1199, 1239
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 4 cut(s) 330, 732, 1199, 1239
MwoI GCNNNNNNNGC 3 cut(s) 465, 746, 1079
NciI CCSGG 3 cut(s) 197, 258, 930
NdeII GATC 5 cut(s) 145, 217, 720, 826, 1111
NlaIII CATG 9 cut(s) 121, 269, 328, 584, 692, 1006, 1160, 1171, 1237
NlaIV GGNNCC 3 cut(s) 421, 493, 750
NmuCI GTSAC 4 cut(s) 191, 535, 760, 849
NspI RCATGY 3 cut(s) 328, 584, 1237
NspV TTCGAA 1 cut(s) 402
OliI CACNNNNGTG 1 cut(s) 1270
PaeI GCATGC 2 cut(s) 328, 584
PaeR7I CTCGAG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 1002
PciSI GCTCTTC 1 cut(s) 1092
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 55, 565, 950
PflFI GACNNNGTC 1 cut(s) 758
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 6 cut(s) 22, 115, 311, 579, 909, 1084
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 4 cut(s) 328, 730, 1197, 1237
PspGI CCWGG 4 cut(s) 328, 730, 1197, 1237
PspN4I GGNNCC 3 cut(s) 421, 493, 750
PspPI GGNCC 5 cut(s) 420, 554, 621, 628, 685
PspPPI RGGWCCY 1 cut(s) 420
PspXI VCTCGAGB 1 cut(s) 1058
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 145, 1111
PsyI GACNNNGTC 1 cut(s) 758
RsaI GTAC 5 cut(s) 47, 104, 604, 989, 1019
RsaNI GTAC 5 cut(s) 46, 103, 603, 988, 1018
RseI CAYNNNNRTG 2 cut(s) 897, 1270
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 3 cut(s) 159, 240, 957
SatI GCNGC 6 cut(s) 21, 114, 310, 578, 908, 1083
Sau3AI GATC 5 cut(s) 145, 217, 720, 826, 1111
Sau96I GGNCC 5 cut(s) 420, 554, 621, 628, 685
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 7 cut(s) 197, 258, 330, 732, 930, 1199, 1239
SduI GDGCHC 3 cut(s) 461, 843, 1267
SfaNI GCATC 4 cut(s) 556, 564, 850, 1109
Sfr274I CTCGAG 1 cut(s) 1058
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 4 cut(s) 420, 554, 628, 685
SlaI CTCGAG 1 cut(s) 1058
SmiMI CAYNNNNRTG 2 cut(s) 897, 1270
SmlI CTYRAG 2 cut(s) 239, 1058
SmoI CTYRAG 2 cut(s) 239, 1058
SphI GCATGC 2 cut(s) 328, 584
Sse9I AATT 3 cut(s) 155, 210, 806
SsiI CCGC 3 cut(s) 114, 141, 631
StyD4I CCNGG 7 cut(s) 195, 256, 328, 730, 928, 1197, 1237
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 402, 497, 1059
TasI AATT 3 cut(s) 155, 210, 806
TatI WGTACW 2 cut(s) 45, 1017
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 55, 565, 950
Tru1I TTAA 3 cut(s) 159, 240, 957
Tru9I TTAA 3 cut(s) 159, 240, 957
TscAI CASTG 2 cut(s) 769, 1038
TseFI GTSAC 4 cut(s) 191, 535, 760, 849
TseI GCWGC 5 cut(s) 20, 309, 577, 907, 1082
Tsp45I GTSAC 4 cut(s) 191, 535, 760, 849
TspDTI ATGAA 6 cut(s) 134, 545, 991, 1013, 1019, 1233
TspGWI ACGGA 2 cut(s) 249, 361
TspRI CASTG 2 cut(s) 769, 1038
Tth111I GACNNNGTC 1 cut(s) 758
Van91I CCANNNNNTGG 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 239
VneI GTGCAC 1 cut(s) 1263
VpaK11BI GGWCC 4 cut(s) 420, 554, 628, 685
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 3 cut(s) 155, 210, 806
XceI RCATGY 3 cut(s) 328, 584, 1237
XhoI CTCGAG 1 cut(s) 1058
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.