Rh1AG357200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
59264473 .. 59265132
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG357200.1

Sequence Viewer

Length: 660 bp
ATGCCCTCCTGTATGTTGACAGCAAAACCTCCACTTAATTTGGCAGATTGTCCCTTGTTGGATTTCCCTGCCTTTCTTCCAGACCCACTCATCTGGTTGCCAATGCCAACTTCTCAGCAGATCCCAACCTTCAATCCTTTGATTTTTGATCCGATTGTTCACATTCCAGTTATGGATATTTGCTCTTCCGGTCATGGCTACCTTGTCAGTGCTGGCCTTGCTATTTCAACTGGCATTCCTCCCTTGCACTCAAACCTTATGAATCCGTTGATTCCTCAAACTGCTTCCATGTTGGAGAAGGATGCTAGAGAGAGACTGCGTTGGCTGCTCATAAGCGGTTCAACTCAGAGTAGCTCACCGCTGATGGATGTATTACCTGCCATGCTAACAAATGCAGATGAGAATAGAAATATGCTTGTTGCTGGGAGCCATGGTCAATACACTGGAACCAGCGACGTTGATGTAATTGCAAATAGCATTGCAGCCATGAGTATGGTTTCACTGCATGGGATATCTACTGGTGGAACTGTTTTGGAGAATTGTGGCAGCAACAATGGTTTTGATATACAGGATGAGGGATCTAGTGGATTGGGTGGATCCTGTTTGGAAGATCAGGGTACCTTTTGTTCGAATTATGGGATGAAAAGGACTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.26

Weight (kDa)

4.45

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 617
AciI CCGC 2 cut(s) 336, 359
AclWI GGATC 5 cut(s) 115, 143, 586, 591, 604
AfaI GTAC 1 cut(s) 619
AgsI TTSAA 3 cut(s) 133, 228, 342
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 5 cut(s) 115, 143, 586, 591, 604
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 325, 482, 546
Asp718I GGTACC 1 cut(s) 617
AsuHPI GGTGA 1 cut(s) 348
AsuII TTCGAA 1 cut(s) 629
BamHI GGATCC 1 cut(s) 596
BanI GGYRCC 1 cut(s) 617
BbvI GCAGC 3 cut(s) 312, 494, 558
BccI CCATC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 306, 582
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 3 cut(s) 326, 483, 547
BlsI GCNGC 3 cut(s) 327, 484, 548
BmiI GGNNCC 4 cut(s) 428, 448, 598, 619
BmsI GCATC 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bse1I ACTGG 4 cut(s) 167, 235, 448, 523
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 4 cut(s) 307, 373, 577, 645
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 128, 359
BseNI ACTGG 4 cut(s) 167, 235, 448, 523
BseXI GCAGC 3 cut(s) 312, 494, 558
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 617
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 629
Bsp143I GATC 5 cut(s) 120, 148, 578, 596, 610
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 2 cut(s) 336, 359
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 127, 358
BspLI GGNNCC 4 cut(s) 428, 448, 598, 619
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 5 cut(s) 115, 143, 586, 591, 604
BspQI GCTCTTC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 4 cut(s) 167, 235, 448, 523
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 5 cut(s) 120, 148, 578, 596, 610
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 114, 345
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 307, 373, 577, 645
BstKTI GATC 5 cut(s) 123, 151, 581, 599, 613
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 5 cut(s) 120, 148, 578, 596, 610
BstMWI GCNNNNNNNGC 2 cut(s) 218, 325
BstV1I GCAGC 3 cut(s) 312, 494, 558
BstX2I RGATCY 3 cut(s) 120, 578, 596
BstXI CCANNNNNNTGG 2 cut(s) 93, 493
BstYI RGATCY 3 cut(s) 120, 578, 596
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 307, 373, 577, 645
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 3 cut(s) 214, 441, 500
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 618
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 6 cut(s) 194, 289, 382, 431, 487, 506
CviJI RGCY 6 cut(s) 198, 216, 325, 354, 429, 485
CviKI_1 RGCY 6 cut(s) 198, 216, 325, 354, 429, 485
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 2 cut(s) 114, 345
DpnI GATC 5 cut(s) 122, 150, 580, 598, 612
DpnII GATC 5 cut(s) 120, 148, 578, 596, 610
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 430
Eco32I GATATC 1 cut(s) 513
EcoRV GATATC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 6 cut(s) 197, 292, 385, 434, 490, 509
FaqI GGGAC 1 cut(s) 36
FatI CATG 6 cut(s) 193, 288, 381, 430, 486, 505
Fnu4HI GCNGC 3 cut(s) 326, 483, 547
FokI GGATG 4 cut(s) 314, 380, 584, 652
Fsp4HI GCNGC 3 cut(s) 326, 483, 547
FspBI CTAG 2 cut(s) 306, 582
GluI GCNGC 3 cut(s) 326, 483, 547
GsaI CCCAGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 189
Hin1II CATG 6 cut(s) 197, 292, 385, 434, 490, 509
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 262, 271
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 2 cut(s) 18, 160
Hpy188I TCNGA 2 cut(s) 153, 348
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 18, 160
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 139, 292
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 247, 395, 470, 482, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 325
HpyF3I CTNAG 2 cut(s) 114, 345
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 6 cut(s) 197, 292, 385, 434, 490, 509
KpnI GGTACC 1 cut(s) 621
Kzo9I GATC 5 cut(s) 120, 148, 578, 596, 610
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 426
Lsp1109I GCAGC 3 cut(s) 312, 494, 558
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 306, 582
MaeII ACGT 1 cut(s) 456
MalI GATC 5 cut(s) 122, 150, 580, 598, 612
MboI GATC 5 cut(s) 120, 148, 578, 596, 610
MboII GAAGA 3 cut(s) 68, 177, 620
MflI RGATCY 3 cut(s) 120, 578, 596
MluCI AATT 4 cut(s) 37, 465, 538, 631
MmeI TCCRAC 2 cut(s) 39, 273
MnlI CCTC 5 cut(s) 16, 39, 249, 285, 568
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 218, 325
NcoI CCATGG 1 cut(s) 430
NdeII GATC 5 cut(s) 120, 148, 578, 596, 610
NlaIII CATG 6 cut(s) 197, 292, 385, 434, 490, 509
NlaIV GGNNCC 4 cut(s) 428, 448, 598, 619
NspV TTCGAA 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 262, 271
PkrI GCNGC 3 cut(s) 327, 484, 548
PspFI CCCAGC 1 cut(s) 422
PspN4I GGNNCC 4 cut(s) 428, 448, 598, 619
PsrI GAACNNNNNNTAC 2 cut(s) 610, 642
PsuI RGATCY 3 cut(s) 120, 578, 596
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 326, 483, 547
Sau3AI GATC 5 cut(s) 120, 148, 578, 596, 610
SetI ASST 8 cut(s) 31, 131, 204, 258, 356, 379, 459, 623
SfaNI GCATC 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 4 cut(s) 37, 465, 538, 631
SsiI CCGC 2 cut(s) 336, 359
SspMI CTAG 2 cut(s) 306, 582
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 629
TasI AATT 4 cut(s) 37, 465, 538, 631
TfiI GAWTC 2 cut(s) 262, 271
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 3 cut(s) 214, 448, 507
TseI GCWGC 3 cut(s) 325, 482, 546
TspDTI ATGAA 2 cut(s) 275, 656
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 3 cut(s) 214, 448, 507
XspI CTAG 2 cut(s) 306, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.