Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004441

Physical Location & Seq

Genomic Coordinates Reverse (-)

21961292 .. 21961942

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTGTCAACAAAACCATCTCTTAATTTGGCTGATTCCCCCTTGCCTGATTTCCCTGCATTTCTCCCAGACCCACTGGTTAGGCTACCAAGGCCAACTTCTCAGCATATCCCAACTTTCACACCCTTGATGTGCGACCAAATTGTTCACATTCCAGTCATCGATATATGCTCGTCGGGTCAAGGATACTTCGTCAGCGCTGGTCCCGCTATTTCAAATAAAGGTGCCAGAGAGACACTGCGACGACTTCTAATCAGTGGTTCGACCCAGAATAGCCCACAGCTGATAGATGTATTGCCTGCTATGCTATCAAATGCACATGAGAACCGAAACGTGATTGTTGCTGGGAGCCGGGGTCTCTACAGTGGAACCAGGGACGTTGACGTGATTGCAAACAGCATCGCAGCCATGGATAATTCTAGCAGTCGCGACAGTTTTAGTATACAGGAAGTGGGATCAAGTGGGCTGGATGTACCTTGTTCGGAGGATAAAGGTATCGCCCTTTGTTCGGATTTTAGGGTAAAGAGGGGTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.12

Weight (kDa)

5.31

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950
fragaria_vesca	FvH4_7g24020 FvH4_7g24020 FvH4_7g24020
malus_domestica	MD01G1147200.v1.1
prunus_persica	Prupe.2G246100_v2.0.a1
pyrus_communis	pycom01g16620 pycom07g19650 pycom07g19670
rosa_chinensis	RchiOBHm_Chr1g0369361 RchiOBHm_Chr1g0369401
rosa_laevigata	RLG00000027133
rosa_multiflora	Rmu_co8268097.1_g000001 Rmu_sc0003612.1_g000020 Rmu_sc0006332.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287680
rosa_rugosa	Rorug01G0349700 Rorug01G0349800
rosa_samantha	Rh1AG357200 Rh1AG357400 Rh1BG321400 Rh1CG335300 Rh1DG352100
rosa_wichuraiana	Rw1G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	442
AccII	CGCG	1 cut(s)	429
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	463
AfaI	GTAC	1 cut(s)	474
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	1 cut(s)	216
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	227, 362
AlwI	GGATC	1 cut(s)	463
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	227, 362
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	353, 373
Bme18I	GGWCC	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	205, 226, 350, 370
BmrFI	CCNGG	2 cut(s)	353, 373
BmsI	GCATC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	89, 352, 372, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	81, 155
BseBI	CCWGG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	89, 352, 372, 408
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	81, 155
BseXI	GCAGC	1 cut(s)	416
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	2 cut(s)	189, 389
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	227, 362
BsmFI	GGGAC	2 cut(s)	189, 389
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	455
Bsp19I	CCATGG	1 cut(s)	408
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	205, 226, 350, 370
BspPI	GGATC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	81, 155
BssECI	CCNNGG	4 cut(s)	89, 352, 372, 408
BssMI	GATC	1 cut(s)	455
BssNAI	GTATAC	1 cut(s)	443
BssT1I	CCWWGG	2 cut(s)	89, 408
Bst1107I	GTATAC	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	365, 434
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	458
BstMAI	GTCTC	2 cut(s)	227, 362
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 206, 304
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	351, 371
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	416
BstZ17I	GTATAC	1 cut(s)	443
Bsu15I	ATCGAT	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	4 cut(s)	74, 236, 262, 370
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	320, 409
CviJI	RGCY	8 cut(s)	32, 85, 94, 276, 283, 351, 407, 466
CviKI_1	RGCY	8 cut(s)	32, 85, 94, 276, 283, 351, 407, 466
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	89, 408
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	203
Eco47III	AGCGCT	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	89, 408
ErhI	CCWWGG	2 cut(s)	89, 408
FaeI	CATG	2 cut(s)	323, 412
FaiI	YATR	7 cut(s)	108, 167, 169, 305, 321, 410, 443
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FaqI	GGGAC	2 cut(s)	189, 389
FatI	CATG	2 cut(s)	319, 408
FauI	CCCGC	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	323, 412
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	9, 382
HindII	GTYRAC	2 cut(s)	9, 382
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	4 cut(s)	9, 148, 382, 443
Hpy188I	TCNGA	2 cut(s)	484, 511
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	4 cut(s)	9, 148, 382, 443
Hpy99I	CGWCG	2 cut(s)	178, 246
HpyCH4III	ACNGT	2 cut(s)	365, 434
HpyCH4IV	ACGT	3 cut(s)	333, 378, 384
HpyCH4V	TGCA	3 cut(s)	59, 317, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 206, 304
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	3 cut(s)	333, 378, 384
Hsp92II	CATG	2 cut(s)	323, 412
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	333, 378, 384
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MluCI	AATT	3 cut(s)	25, 141, 415
MnlI	CCTC	2 cut(s)	478, 519
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	353, 373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	91, 206, 304
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	323, 412
NlaIV	GGNNCC	4 cut(s)	205, 226, 350, 370
NruI	TCGCGA	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	205, 226, 350, 370
PspPI	GGNCC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	283
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	353, 373
SetI	ASST	7 cut(s)	226, 285, 336, 381, 387, 478, 496
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	203
Sse9I	AATT	3 cut(s)	25, 141, 415
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	351, 371
StyI	CCWWGG	2 cut(s)	89, 408
TaaI	ACNGT	2 cut(s)	365, 434
TaiI	ACGT	3 cut(s)	336, 381, 387
TaqI	TCGA	2 cut(s)	162, 263
TasI	AATT	3 cut(s)	25, 141, 415
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	4 cut(s)	81, 243, 262, 370
TseI	GCWGC	1 cut(s)	404
TspRI	CASTG	4 cut(s)	81, 243, 262, 370
VpaK11BI	GGWCC	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.