Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004441

Physical Location & Seq

Genomic Coordinates Reverse (-)

59274861 .. 59280387

Gene Structure 5527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGACCGGTCATAGAAACGAAGACTTTCACGCTAACGACGAGATCGACGGCGTCGATCGCATTTCCGATCGGTCAAACGCCGAGGAATTCGAGGACTCGTCGGCCGCGAACGGGGTCGGGAGCTCCGGCGAGGGAGCGACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGCGGTTGACCGGGATACTGGTTGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGCGCAGACGAGAGGTTGAAGCCTTTGCTGAAGATGAATGCTTCGAACGATGCCGCAGAAGGTCGGTTGCTGGCTCAGTTGACGCAGATCTTTGATAAACAGCATTTTGAGCCAGCGGAAGTTGGAATGCTAGCGAGGTGCTTCTGCATACCACTTGTTTCTGTTCGTGTTGGAAAGATCAACAAGCAAGGGATTTTGTTGTGCCCTACCAATTCAAAGGGTAATTTGAATCTTACAGTCTTGCCAACATCCGATCTACGTCTTTCATTTGTTGGGGATGATGGCCATACAGATAGACTATTCACCTTAAATAGCAAATCCCAGTGCTCTGCTGTAGAAGTCAATGAGATTCCAGCAGACAATTCTGGCCGGTCTTTCATTATCCAAATCCCAGATGGTCGGGTTTTTCACTTTTGGTGCTCTGAGACTTCAAAGCTTTTGGGAATTGAATTGATTTCAAAGATGAAGGATCTGATCAGGAGGAAGCCCTCTATTGCCGAGTTAACTGGAATCAGCGAGTCACGTCTTGGTTGCTTTGCAACTCACCTTCGTGCCTATCTGGTGGGATCAACAGTGGTTGGAAGCGGATCAAGTTCTGCACCCTCAAATACTGATGTTAATACCTCCAATATGGAGCTATTTGATACAGCTCAAGATGGACAACTCTCGTCAACATCATCAAAGTCGCTGCGTTCTCGACATAGTGTGAATCAGTCAATGAAGGCAAATTCATCGTTTCAGGGTAGCCTGAGTCCAAGGTCAAGCTCTTTCAAAGAGGGTCTTCCCAGAACCTTGTCGTCCCTGAGGAATATATCCAGGGAAAAGTTGAGGAGGCGAGGGGACATTTATCTTTCAGCGGTCGATGACCCAACAATCGTTTCACCAGTGGCAATCAATGCATCTTGTTCAAATCAATCTGAAAATGACAAGTGTGTAGAAGTTGTCGCAAGTTGCTCATTATCTTCATCAAGTTTTCTGGAGTCACTTGGAAAATTGACTGTCCAACCAACCCTGAACTCTGCATCTCAAATTCCATACATGGCTACTCCTCTTTTGTCCCCTTACTACTGTTGGTGCCCTCCCGGATCATCGGGTTTGCAGTACTCACAAGAACCTCCTGCAATCTCCGGCTCATCCATTGAATCAGCTTTGCTTCCACCACTTTCTTCTTTATTACCTGCCAGTATGCCCTCCTGTATGTTGACAGCAAAACCTCCACTTAATTTGGCAGATTGTCCCTTGTTGGATTTCCCTGCCTTTCTTCCAGACCCACTCATCCGGTTGCCAAGGCCAACTTCTCAGCAGATCCCAACCTTCAATCCTTTGATTTGTGATTCGATTGTTCACATTCCTGTTATGGATATTTGCTCTTCCGGTCAAGGTTACCTTGTCAGTGCTGGCCCCACTATTTCAACTGGCATTCCTCCCTTGCACTCAAACCTTATGAATCCATTGATTCCTCAAACTGATTCTATGTTGGAGAAGGGTGCTAGAGAGACTCTGCGTCGGCTGCTCATAAGTGGTTCAACCCAGAGTAGCTCACCGCTGATGGATGTATTACCTGCCATGCTAACAAATGCAGATGAGAATAGAAATATGCTTGTTGCTGGGAGCCGTGGTCTATACACTGGAACCAGCGACGTTGATGTAATTGCAAATAGCATTGCAGCCATGAGTATGGTTTCACTGCCTGGGATATCTACTGGTGGAACTGTTTTGGAGAATTGTGGCAGCAGCAATGGTTTTGACATACAGGATGAGGGATCTAGTGGATTGGGTGGATCCTGTTTGGAAGATCAGGGTACCTTCTGTTCGAATTATGGGATGAAAAGGACTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

711

Amino Acids

75.94

Weight (kDa)

4.98

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950 AT2G39950
fragaria_vesca	FvH4_7g24020 FvH4_7g24020 FvH4_7g24020
malus_domestica	MD01G1147200.v1.1
prunus_persica	Prupe.2G246100_v2.0.a1
pyrus_communis	pycom01g16620 pycom07g19650 pycom07g19670
rosa_chinensis	RchiOBHm_Chr1g0369361 RchiOBHm_Chr1g0369401
rosa_laevigata	RLG00000027133
rosa_multiflora	Rmu_co8268097.1_g000001 Rmu_sc0003612.1_g000020 Rmu_sc0006332.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287680
rosa_rugosa	Rorug01G0349700 Rorug01G0349800
rosa_samantha	Rh1AG357200 Rh1AG357400 Rh1BG321400 Rh1CG335300 Rh1DG352100
rosa_wichuraiana	Rw1G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
Acc36I	ACCTGC	3 cut(s)	265, 1477, 1861
Acc65I	GGTACC	1 cut(s)	2093
AccB1I	GGYRCC	2 cut(s)	1365, 2093
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	3 cut(s)	107, 287, 294
AciI	CCGC	7 cut(s)	105, 172, 345, 407, 876, 1148, 1835
AclWI	GGATC	8 cut(s)	768, 865, 886, 1384, 1591, 2062, 2067, 2080
AcoI	YGGCCR	3 cut(s)	102, 574, 658
AcsI	RAATTY	3 cut(s)	86, 1018, 1320
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	51, 140
AfaI	GTAC	2 cut(s)	1394, 2095
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	5
AhdI	GACNNNNNGTC	1 cut(s)	1794
AjiI	CACGTC	1 cut(s)	815
AjnI	CCWGG	2 cut(s)	1106, 1981
AjuI	GAANNNNNNNTTGG	4 cut(s)	1153, 1185, 1570, 1602
AleI	CACNNNNGTG	1 cut(s)	840
AluBI	AGCT	7 cut(s)	123, 727, 928, 941, 1056, 1439, 1830
AluI	AGCT	7 cut(s)	123, 727, 928, 941, 1056, 1439, 1830
Alw21I	GWGCWC	3 cut(s)	125, 620, 713
Alw26I	GTCTC	2 cut(s)	710, 1781
AlwI	GGATC	8 cut(s)	768, 865, 886, 1384, 1591, 2062, 2067, 2080
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	5 cut(s)	102, 574, 658, 1580, 1690
ApeKI	GCWGC	7 cut(s)	217, 220, 979, 1801, 1958, 2022, 2025
ApoI	RAATTY	3 cut(s)	86, 1018, 1320
AsiGI	ACCGGT	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	2093
AspLEI	GCGC	3 cut(s)	265, 287, 296
AspS9I	GGNCC	2 cut(s)	238, 1691
AsuC2I	CCSGG	3 cut(s)	181, 242, 1374
AsuHPI	GGTGA	4 cut(s)	586, 827, 1164, 1824
AsuII	TTCGAA	2 cut(s)	335, 2105
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	1094
BaeGI	GKGCMC	2 cut(s)	497, 1370
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	2072
BanI	GGYRCC	2 cut(s)	1365, 2093
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	27, 1064
Bbv12I	GWGCWC	3 cut(s)	125, 620, 713
BbvI	GCAGC	7 cut(s)	204, 232, 966, 1788, 1970, 2034, 2037
BccI	CCATC	4 cut(s)	566, 680, 941, 1834
BceAI	ACGGC	2 cut(s)	64, 1890
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	2 cut(s)	1108, 1983
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	3 cut(s)	181, 242, 1374
BcoDI	GTCTC	2 cut(s)	710, 1781
BfaI	CTAG	3 cut(s)	422, 1782, 2058
BfmI	CTRYAG	2 cut(s)	218, 624
BfoI	RGCGCY	1 cut(s)	266
BfuAI	ACCTGC	3 cut(s)	265, 1477, 1861
BfuI	GTATCC	1 cut(s)	177
BglII	AGATCT	2 cut(s)	208, 378
BisI	GCNGC	9 cut(s)	105, 218, 221, 345, 980, 1802, 1959, 2023, 2026
BlsI	GCNGC	9 cut(s)	106, 219, 222, 346, 981, 1803, 1960, 2024, 2027
BmcAI	AGTACT	1 cut(s)	1394
Bme1390I	CCNGG	5 cut(s)	181, 242, 1108, 1374, 1983
Bme18I	GGWCC	1 cut(s)	238
BmeRI	GACNNNNNGTC	1 cut(s)	1794
BmgBI	CACGTC	1 cut(s)	815
BmgT120I	GGNCC	2 cut(s)	238, 1691
BmiI	GGNNCC	6 cut(s)	1367, 1693, 1904, 1924, 2074, 2095
BmrFI	CCNGG	5 cut(s)	181, 242, 1108, 1374, 1983
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	3 cut(s)	331, 1199, 1322
BmtI	GCTAGC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	2 cut(s)	27, 1064
BpmI	CTGGAG	1 cut(s)	1289
Bpu14I	TTCGAA	2 cut(s)	335, 2105
BpuEI	CTTGAG	1 cut(s)	927
BpuMI	CCSGG	3 cut(s)	181, 242, 1374
BsaHI	GRCGYC	2 cut(s)	51, 140
BsaJI	CCNNGG	6 cut(s)	81, 1046, 1107, 1577, 1906, 1982
BsaWI	WCCGGW	3 cut(s)	5, 1569, 1664
BsaXI	ACNNNNNCTCC	2 cut(s)	1894, 1924
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	2 cut(s)	5, 660
Bse1I	ACTGG	8 cut(s)	192, 613, 802, 1175, 1473, 1711, 1924, 1999
Bse21I	CCTNAGG	1 cut(s)	1094
Bse3DI	GCAATG	2 cut(s)	1953, 2035
BseBI	CCWGG	2 cut(s)	1108, 1983
BseDI	CCNNGG	6 cut(s)	81, 1046, 1107, 1577, 1906, 1982
BseGI	GGATG	7 cut(s)	539, 574, 1424, 1566, 1849, 2053, 2121
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	1953, 2035
BseMII	CTCAG	5 cut(s)	380, 705, 1031, 1085, 1604
BseNI	ACTGG	8 cut(s)	192, 613, 802, 1175, 1473, 1711, 1924, 1999
BseRI	GAGGAG	2 cut(s)	1135, 1329
BseSI	GKGCMC	2 cut(s)	497, 1370
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	7 cut(s)	204, 232, 966, 1788, 1970, 2034, 2037
BseYI	CCCAGC	1 cut(s)	1898
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	3 cut(s)	107, 287, 294
Bsh1285I	CGRYCG	4 cut(s)	58, 70, 105, 1152
BshFI	GGCC	5 cut(s)	104, 576, 660, 1582, 1692
BshNI	GGYRCC	2 cut(s)	1365, 2093
BshTI	ACCGGT	1 cut(s)	5
BsiEI	CGRYCG	4 cut(s)	58, 70, 105, 1152
BsiHKAI	GWGCWC	3 cut(s)	125, 620, 713
BsiSI	CCGG	9 cut(s)	6, 126, 180, 241, 661, 1374, 1419, 1570, 1665
BslFI	GGGAC	5 cut(s)	215, 1075, 1145, 1333, 1512
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	710, 1781
BsmFI	GGGAC	5 cut(s)	215, 1075, 1145, 1333, 1512
BsmI	GAATGC	3 cut(s)	334, 423, 1710
BsnI	GGCC	5 cut(s)	104, 576, 660, 1582, 1692
Bsp119I	TTCGAA	2 cut(s)	335, 2105
Bsp1286I	GDGCHC	5 cut(s)	125, 497, 620, 713, 1370
BspACI	CCGC	7 cut(s)	105, 172, 345, 407, 876, 1148, 1835
BspANI	GGCC	5 cut(s)	104, 576, 660, 1582, 1692
BspCNI	CTCAG	5 cut(s)	379, 706, 1032, 1086, 1603
BspFNI	CGCG	3 cut(s)	107, 287, 294
BspLI	GGNNCC	6 cut(s)	1367, 1693, 1904, 1924, 2074, 2095
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	3 cut(s)	265, 1477, 1861
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	8 cut(s)	768, 865, 886, 1384, 1591, 2062, 2067, 2080
BspQI	GCTCTTC	2 cut(s)	162, 1666
BspT104I	TTCGAA	2 cut(s)	335, 2105
BspT107I	GGYRCC	2 cut(s)	1365, 2093
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	1953, 2035
BsrFI	RCCGGY	2 cut(s)	5, 660
BsrI	ACTGG	8 cut(s)	192, 613, 802, 1175, 1473, 1711, 1924, 1999
BssAI	RCCGGY	2 cut(s)	5, 660
BssECI	CCNNGG	6 cut(s)	81, 1046, 1107, 1577, 1906, 1982
BssNI	GRCGYC	2 cut(s)	51, 140
BssT1I	CCWWGG	2 cut(s)	1046, 1577
Bst2UI	CCWGG	2 cut(s)	1108, 1983
Bst4CI	ACNGT	5 cut(s)	529, 865, 1291, 1361, 2005
Bst6I	CTCTTC	2 cut(s)	162, 1666
BstACI	GRCGYC	2 cut(s)	51, 140
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstBI	TTCGAA	2 cut(s)	335, 2105
BstC8I	GCNNGC	4 cut(s)	363, 405, 423, 1690
BstDEI	CTNAG	5 cut(s)	366, 714, 1040, 1094, 1590
BstDSI	CCRYGG	1 cut(s)	1906
BstEII	GGTNACC	1 cut(s)	1673
BstF5I	GGATG	7 cut(s)	539, 574, 1424, 1566, 1849, 2053, 2121
BstFNI	CGCG	3 cut(s)	107, 287, 294
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	3 cut(s)	265, 287, 296
BstMAI	GTCTC	2 cut(s)	710, 1781
BstMCI	CGRYCG	4 cut(s)	58, 70, 105, 1152
BstMWI	GCNNNNNNNGC	9 cut(s)	57, 169, 262, 271, 291, 293, 400, 1187, 1801
BstNI	CCWGG	2 cut(s)	1108, 1983
BstPI	GGTNACC	1 cut(s)	1673
BstSCI	CCNGG	5 cut(s)	179, 240, 1106, 1372, 1981
BstSFI	CTRYAG	2 cut(s)	218, 624
BstSLI	GKGCMC	2 cut(s)	497, 1370
BstUI	CGCG	3 cut(s)	107, 287, 294
BstV1I	GCAGC	7 cut(s)	204, 232, 966, 1788, 1970, 2034, 2037
BstV2I	GAAGAC	2 cut(s)	27, 1064
BstX2I	RGATCY	6 cut(s)	208, 378, 760, 1596, 2054, 2072
BstXI	CCANNNNNNTGG	1 cut(s)	1969
BstYI	RGATCY	6 cut(s)	208, 378, 760, 1596, 2054, 2072
BstZI	CGGCCG	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	1094
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	104, 576, 660, 1582, 1692
BtgI	CCRYGG	1 cut(s)	1906
BtrI	CACGTC	1 cut(s)	815
BtsCI	GGATG	7 cut(s)	539, 574, 1424, 1566, 1849, 2053, 2121
BtsI	GCAGTG	2 cut(s)	257, 1976
BtsIMutI	CAGTG	7 cut(s)	257, 620, 870, 1182, 1690, 1917, 1976
BveI	ACCTGC	3 cut(s)	265, 1477, 1861
Cac8I	GCNNGC	4 cut(s)	363, 405, 423, 1690
CfoI	GCGC	3 cut(s)	265, 287, 296
Cfr10I	RCCGGY	2 cut(s)	5, 660
Cfr13I	GGNCC	2 cut(s)	238, 1691
CseI	GACGC	3 cut(s)	40, 382, 1784
Csp6I	GTAC	2 cut(s)	1393, 2094
CspAI	ACCGGT	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	1497, 1532
CviAII	CATG	3 cut(s)	1330, 1858, 1963
CviQI	GTAC	2 cut(s)	1393, 2094
DdeI	CTNAG	5 cut(s)	366, 714, 1040, 1094, 1590
DriI	GACNNNNNGTC	1 cut(s)	1794
EaeI	YGGCCR	3 cut(s)	102, 574, 658
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	162, 1666
Eam1105I	GACNNNNNGTC	1 cut(s)	1794
EarI	CTCTTC	2 cut(s)	162, 1666
Ecl136II	GAGCTC	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	1046, 1577
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	1989
Eco47I	GGWCC	1 cut(s)	238
Eco47III	AGCGCT	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	1673
EcoICRI	GAGCTC	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	1673
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	1106, 1981
EcoRV	GATATC	1 cut(s)	1989
EcoT14I	CCWWGG	2 cut(s)	1046, 1577
EcoT22I	ATGCAT	1 cut(s)	1192
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	1046, 1577
FaeI	CATG	3 cut(s)	1333, 1861, 1966
FalI	AAGNNNNNCTT	6 cut(s)	1056, 1088, 1570, 1602, 1662, 1694
FaqI	GGGAC	5 cut(s)	215, 1075, 1145, 1333, 1512
FatI	CATG	3 cut(s)	1329, 1857, 1962
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	9 cut(s)	105, 218, 221, 345, 980, 1802, 1959, 2023, 2026
FokI	GGATG	7 cut(s)	526, 581, 1411, 1553, 1856, 2060, 2128
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	9 cut(s)	105, 218, 221, 345, 980, 1802, 1959, 2023, 2026
FspBI	CTAG	3 cut(s)	422, 1782, 2058
GlaI	GCGC	3 cut(s)	264, 286, 295
GluI	GCNGC	9 cut(s)	105, 218, 221, 345, 980, 1802, 1959, 2023, 2026
GsaI	CCCAGC	1 cut(s)	1902
GsuI	CTGGAG	1 cut(s)	1289
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	5 cut(s)	104, 576, 660, 1582, 1692
HapII	CCGG	9 cut(s)	6, 126, 180, 241, 661, 1374, 1419, 1570, 1665
HgaI	GACGC	3 cut(s)	40, 382, 1784
HhaI	GCGC	3 cut(s)	265, 287, 296
Hin1I	GRCGYC	2 cut(s)	51, 140
Hin1II	CATG	3 cut(s)	1333, 1861, 1966
Hin6I	GCGC	3 cut(s)	263, 285, 294
HinP1I	GCGC	3 cut(s)	263, 285, 294
HincII	GTYRAC	5 cut(s)	177, 372, 795, 963, 1494
HindII	GTYRAC	5 cut(s)	177, 372, 795, 963, 1494
HindIII	AAGCTT	1 cut(s)	725
HpaI	GTTAAC	1 cut(s)	795
HpaII	CCGG	9 cut(s)	6, 126, 180, 241, 661, 1374, 1419, 1570, 1665
HphI	GGTGA	4 cut(s)	586, 827, 1164, 1824
Hpy166II	GTNNAC	6 cut(s)	177, 372, 795, 963, 1494, 1636
Hpy188I	TCNGA	5 cut(s)	67, 544, 715, 765, 1210
Hpy188III	TCNNGA	6 cut(s)	118, 769, 944, 987, 1268, 1556
Hpy8I	GTNNAC	6 cut(s)	177, 372, 795, 963, 1494, 1636
Hpy99I	CGWCG	9 cut(s)	41, 50, 56, 103, 142, 145, 148, 1800, 1934
HpyAV	CCTTC	8 cut(s)	188, 344, 751, 848, 1006, 1615, 1768, 2107
HpyCH4III	ACNGT	5 cut(s)	529, 865, 1291, 1361, 2005
HpyCH4IV	ACGT	4 cut(s)	140, 550, 814, 1932
HpyF10VI	GCNNNNNNNGC	9 cut(s)	57, 169, 262, 271, 291, 293, 400, 1187, 1801
HpyF3I	CTNAG	5 cut(s)	366, 714, 1040, 1094, 1590
HpySE526I	ACGT	4 cut(s)	140, 550, 814, 1932
Hsp92I	GRCGYC	2 cut(s)	51, 140
Hsp92II	CATG	3 cut(s)	1333, 1861, 1966
HspAI	GCGC	3 cut(s)	263, 285, 294
KpnI	GGTACC	1 cut(s)	2097
Ksp22I	TGATCA	1 cut(s)	765
KspAI	GTTAAC	1 cut(s)	795
LguI	GCTCTTC	2 cut(s)	162, 1666
LmnI	GCTCC	5 cut(s)	120, 128, 134, 925, 1902
Lsp1109I	GCAGC	7 cut(s)	204, 232, 966, 1788, 1970, 2034, 2037
LweI	GCATC	3 cut(s)	331, 1199, 1322
MaeI	CTAG	3 cut(s)	422, 1782, 2058
MaeII	ACGT	4 cut(s)	140, 550, 814, 1932
MaeIII	GTNAC	3 cut(s)	810, 1272, 1673
MbiI	CCGCTC	1 cut(s)	172
MboII	GAAGA	9 cut(s)	32, 179, 334, 1064, 1245, 1449, 1544, 1653, 2096
MflI	RGATCY	6 cut(s)	208, 378, 760, 1596, 2054, 2072
MhlI	GDGCHC	5 cut(s)	125, 497, 620, 713, 1370
MlsI	TGGCCA	1 cut(s)	576
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	5 cut(s)	89, 818, 1051, 1280, 1783
MmeI	TCCRAC	6 cut(s)	394, 442, 850, 1318, 1515, 1749
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	1192
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	4 cut(s)	599, 794, 909, 1512
MslI	CAYNNNNRTG	2 cut(s)	840, 1967
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	3 cut(s)	407, 1148, 1837
MspI	CCGG	9 cut(s)	6, 126, 180, 241, 661, 1374, 1419, 1570, 1665
MspR9I	CCNGG	5 cut(s)	181, 242, 1108, 1374, 1983
Mva1269I	GAATGC	3 cut(s)	334, 423, 1710
MvaI	CCWGG	2 cut(s)	1108, 1983
MvnI	CGCG	3 cut(s)	107, 287, 294
MwoI	GCNNNNNNNGC	9 cut(s)	57, 169, 262, 271, 291, 293, 400, 1187, 1801
NciI	CCSGG	3 cut(s)	181, 242, 1374
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	1333, 1861, 1966
NlaIV	GGNNCC	6 cut(s)	1367, 1693, 1904, 1924, 2074, 2095
NmeAIII	GCCGAG	2 cut(s)	106, 814
NmuCI	GTSAC	2 cut(s)	810, 1272
NsiI	ATGCAT	1 cut(s)	1192
NspV	TTCGAA	2 cut(s)	335, 2105
OliI	CACNNNNGTG	1 cut(s)	840
PciSI	GCTCTTC	2 cut(s)	162, 1666
PcsI	WCGNNNNNNNCGW	4 cut(s)	36, 42, 51, 104
PctI	GAATGC	3 cut(s)	334, 423, 1710
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	9 cut(s)	520, 640, 801, 1000, 1433, 1625, 1738, 1747, 1760
PflFI	GACNNNGTC	2 cut(s)	50, 142
PfoI	TCCNGGA	1 cut(s)	1372
PinAI	ACCGGT	1 cut(s)	5
PkrI	GCNGC	9 cut(s)	106, 219, 222, 346, 981, 1803, 1960, 2024, 2027
Ple19I	CGATCG	2 cut(s)	58, 70
PleI	GAGTC	5 cut(s)	89, 817, 1050, 1279, 1783
PpsI	GAGTC	5 cut(s)	89, 817, 1050, 1279, 1783
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	1106, 1981
PspEI	GGTNACC	1 cut(s)	1673
PspFI	CCCAGC	1 cut(s)	1898
PspGI	CCWGG	2 cut(s)	1106, 1981
PspN4I	GGNNCC	6 cut(s)	1367, 1693, 1904, 1924, 2074, 2095
PspPI	GGNCC	2 cut(s)	238, 1691
PsrI	GAACNNNNNNTAC	2 cut(s)	2086, 2118
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	6 cut(s)	208, 378, 760, 1596, 2054, 2072
PsyI	GACNNNGTC	2 cut(s)	50, 142
PvuI	CGATCG	2 cut(s)	58, 70
RsaI	GTAC	2 cut(s)	1394, 2095
RsaNI	GTAC	2 cut(s)	1393, 2094
RseI	CAYNNNNRTG	2 cut(s)	840, 1967
SacI	GAGCTC	1 cut(s)	125
SapI	GCTCTTC	2 cut(s)	162, 1666
SaqAI	TTAA	4 cut(s)	599, 794, 909, 1512
SatI	GCNGC	9 cut(s)	105, 218, 221, 345, 980, 1802, 1959, 2023, 2026
Sau96I	GGNCC	2 cut(s)	238, 1691
ScaI	AGTACT	1 cut(s)	1394
SchI	GAGTC	5 cut(s)	89, 818, 1051, 1280, 1783
ScrFI	CCNGG	5 cut(s)	181, 242, 1108, 1374, 1983
SduI	GDGCHC	5 cut(s)	125, 497, 620, 713, 1370
SfaNI	GCATC	3 cut(s)	331, 1199, 1322
SfcI	CTRYAG	2 cut(s)	218, 624
SfuI	TTCGAA	2 cut(s)	335, 2105
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	840, 1967
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
SsiI	CCGC	7 cut(s)	105, 172, 345, 407, 876, 1148, 1835
SspMI	CTAG	3 cut(s)	422, 1782, 2058
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	5 cut(s)	179, 240, 1106, 1372, 1981
StyI	CCWWGG	2 cut(s)	1046, 1577
TaaI	ACNGT	5 cut(s)	529, 865, 1291, 1361, 2005
TaiI	ACGT	4 cut(s)	143, 553, 817, 1935
TaqI	TCGA	8 cut(s)	45, 54, 90, 335, 988, 1152, 1628, 2105
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	2 cut(s)	107, 347
TfiI	GAWTC	9 cut(s)	520, 640, 801, 1000, 1433, 1625, 1738, 1747, 1760
Tru1I	TTAA	4 cut(s)	599, 794, 909, 1512
Tru9I	TTAA	4 cut(s)	599, 794, 909, 1512
TscAI	CASTG	7 cut(s)	257, 620, 870, 1182, 1690, 1924, 1983
TseFI	GTSAC	2 cut(s)	810, 1272
TseI	GCWGC	7 cut(s)	217, 220, 979, 1801, 1958, 2022, 2025
Tsp45I	GTSAC	2 cut(s)	810, 1272
TspDTI	ATGAA	9 cut(s)	341, 546, 658, 770, 1011, 1025, 1245, 1751, 2132
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	7 cut(s)	257, 620, 870, 1182, 1690, 1924, 1983
Tth111I	GACNNNGTC	2 cut(s)	50, 142
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	3 cut(s)	86, 1018, 1320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	422, 1782, 2058
ZraI	GACGTC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	1394
Zsp2I	ATGCAT	1 cut(s)	1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.