Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005027

Physical Location & Seq

Genomic Coordinates Reverse (-)

59265358 .. 59268750

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGAAGATCGAAACGTGAGAATGAATACTGCAATGTCCCATGTGATGCCGTATATCAAAGACTCCAAGGACCGGGACGCCGTGTCGTTGGTGTGCCGACGGTGGTACGAGCTGGACGCGCTCACGCGCGAGCACGTGACCATCGCGCTCTGCTACACGACGACTCCCGAGAGGCTCAGGAGGCGGTTCCGGCAGCTCAAGTCGCTGAAGCTCAAGGGGAATCCGAGGGCGGCGATGTTTAATCTGATACCGGAGGATTGGGGAGGCTTTGTGACGCCATGGGTGGAGGCAATTGCCGAGTCGTTTAAGAGCTTGAAGGCTTTGCATTTCCGGAGAATGATTGTGAGGGATTCCGACCTGGAGCTAGTGGCGCGGTCACGCGGCCGTGAGCTCCAATCGCTTAAGCTCGACAAGTGCTCCGGCTTTTCGACTGACGGCCTTGTCCACATCGCGCGCTCCTGCAGGGATTTGAGGACCTTGTTTTTGGAGGAGAGCTCGATAATTGAGAAAGAGGATGAGTGGGGTGAATGGCTACATGAGCTTGCTACAAACAACACTGTACTCGAGACTTTAAACTTCTATATGACGGATCTTGGCAGAATCAGATTTGAAGACCTTGAACTCATAGCCAGGAATTGCCCCTCCTTAACCACTGTGAAAATTAGCGATTGTGAAATTTTGGATCTTCTGGGTTTCTTCCGCCATGCAACTGCTTTAGAAGAATTTTGTGGAGGTTCCTTCGATGATCGATCAGAAAATGATCAATCAGAGAAGTACTCAGTTGTATCACTGCCACGAAAGATATGTCTTTTGGGTCTAACGATGTTGGGGAAGAATGAAATGCCTATTGTATTCCCATTAGCAGCTGCTCTCAAAAAGTTGGATCTCCTATATGCATTGCTCGACACTGAAGACCATTGTACTTTAATTCAAAAGTGCCCCAAGCTGGAAGTTCTCGAGACAAGGAATGTCATTGGAGATAGAGGATTAGTAGTCCTTGCTCGGAGTTGCAAGAGACTGAAGAGGCTCCGAATTGAGCGAGGTGCTGATGAGCAAGGTATGGAGGACGAAGATGGTGTTGTTTCACAGAGGGGTCTGATGGCTTTGGCACAGGGCTGCCTGGAACTGGAGTACTTGGCTGTCTACATGTCAGATATCACAAATGCATCTCTGGAATACATTGGGACTCACTCTAAAAATCTAAATGATTTTCGCCTTGTCCTGCTTGACCGTGAAGAGACGATAACAGATTTACCACTTGACAATGGCGTTCGAGCTCTATTGAGGGGATGCCAAAAGCTTCGAAGGTTTGCTTTGTATCTCCGTCCTGGGGGTTTGACTGATTTGGGGCTTAGTTACGTGGGCCGGTATAGTCAAAATGTGAGATGGATGCTTCTAGGTTATGTTGGTGAATCTGATGCAGGGCTTTTGGAGTTTTCGAAGGGTTGCCTTAGTCTGCAGAAACTAGAAATGAGGGGCTGTTGCTTCAGTGAGGGTGCACTGGCTGTTGCAGTGATGCAGCTGACTGCGCTAAGGTACTTGTGGGTGCAAGGGTACAGGGGATCCCAAACGGGTCGTGATCTTTTGGCAATGACTCGCCCGTATTGGAATATTGAGTTGATTCCTCCTAGACGAGTTAATGTTCTTGATCCGAACGGGGAGGCAGTAGTGGTTGAGCATCCAGCTCATATTCTTGCATACTACTCTCTTGCTGGGCCAAGAAAAGATTTTCCAAATTCTGTTATCCCCTTGGATCCAGAGTTTTTGATTAACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box-like

Protein Analysis

592

Amino Acids

67.33

Weight (kDa)

6.16

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	10 - 45	3.5e-19	F-box
Transp_inhibit	PF18791	65 - 110	2.5e-21	Transport inhibitor response 1 protein domain
DUF7885	PF25372	97 - 407	3.6e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39940
fragaria_vesca	FvH4_7g24000 FvH4_7g24000 FvH4_7g24000
malus_domestica	MD01G1147000.v1.1 MD07G1213600.v1.1
prunus_persica	Prupe.2G246000_v2.0.a1
pyrus_communis	pycom01g16610 pycom07g19640
rosa_chinensis	RchiOBHm_Chr1g0369351 RchiOBHm_Chr1g0369371 RchiOBHm_Chr1g0369381
rosa_laevigata	RLG00000027134 RLG00000027135
rosa_multiflora	Rmu_sc0001482.1_g000008 Rmu_sc0003612.1_g000021
rosa_roxburghii	Rroxscaffold_4G00287690 Rroxscaffold_4G00287710
rosa_rugosa	Rorug01G0349700 Rorug01G0349700
rosa_samantha	Rh1AG357000 Rh1AG357300 Rh1BG321000 Rh1BG321300 Rh1CG335000 Rh1CG335200 Rh1DG351700 Rh1DG352000
rosa_wichuraiana	Rw1G031520 Rw1G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	1143
AccII	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	5 cut(s)	184, 230, 373, 381, 700
AclWI	GGATC	8 cut(s)	597, 690, 891, 1557, 1570, 1643, 1748, 1761
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	675, 722, 1735
AcuI	CTGAAG	4 cut(s)	227, 930, 1040, 1471
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	78, 275
AfaI	GTAC	7 cut(s)	107, 561, 776, 922, 1133, 1538, 1556
AfiI	CCNNNNNNNGG	4 cut(s)	72, 946, 1126, 1330
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	4 cut(s)	316, 611, 620, 932
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	4 cut(s)	357, 629, 1119, 1327
Alw21I	GWGCWC	6 cut(s)	135, 393, 419, 497, 1279, 1501
Alw26I	GTCTC	4 cut(s)	560, 953, 1009, 1232
Alw44I	GTGCAC	1 cut(s)	1497
AlwI	GGATC	8 cut(s)	597, 690, 891, 1557, 1570, 1643, 1748, 1761
Ama87I	CYCGRG	3 cut(s)	167, 563, 956
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	4 cut(s)	382, 436, 1363, 1715
ApaLI	GTGCAC	1 cut(s)	1497
ApeKI	GCWGC	5 cut(s)	193, 863, 866, 1116, 1519
ApoI	RAATTY	3 cut(s)	675, 722, 1735
ArsI	GACNNNNNNTTYG	4 cut(s)	466, 498, 790, 822
AspLEI	GCGC	7 cut(s)	121, 129, 148, 373, 454, 456, 1531
AspS9I	GGNCC	4 cut(s)	70, 474, 1363, 1715
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	536, 1421
AsuII	TTCGAA	2 cut(s)	1303, 1439
AvaI	CYCGRG	3 cut(s)	167, 563, 956
AvaII	GGWCC	2 cut(s)	70, 474
BaeGI	GKGCMC	2 cut(s)	941, 1501
BamHI	GGATCC	2 cut(s)	1562, 1753
BanII	GRGCYC	3 cut(s)	393, 497, 1279
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	618, 918
Bbv12I	GWGCWC	6 cut(s)	135, 393, 419, 497, 1279, 1501
BbvI	GCAGC	5 cut(s)	205, 853, 875, 1103, 1531
BccI	CCATC	4 cut(s)	149, 1067, 1093, 1380
BceAI	ACGGC	4 cut(s)	34, 65, 369, 451
BciT130I	CCWGG	4 cut(s)	359, 631, 1121, 1329
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BfaI	CTAG	4 cut(s)	365, 1397, 1466, 1629
BfmI	CTRYAG	2 cut(s)	460, 1457
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	7 cut(s)	194, 231, 382, 864, 867, 1117, 1520
BlsI	GCNGC	7 cut(s)	195, 232, 383, 865, 868, 1118, 1521
BmcAI	AGTACT	2 cut(s)	776, 1133
Bme1390I	CCNGG	5 cut(s)	74, 359, 631, 1121, 1329
Bme18I	GGWCC	2 cut(s)	70, 474
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	3 cut(s)	167, 563, 956
BmgT120I	GGNCC	4 cut(s)	70, 474, 1363, 1715
BmiI	GGNNCC	5 cut(s)	188, 736, 1028, 1564, 1755
BmrFI	CCNGG	5 cut(s)	74, 359, 631, 1121, 1329
BmsI	GCATC	7 cut(s)	36, 1175, 1280, 1380, 1408, 1506, 1687
BpiI	GAAGAC	2 cut(s)	618, 918
BplI	GAGNNNNNCTC	4 cut(s)	479, 511, 761, 793
BpmI	CTGGAG	2 cut(s)	380, 1148
Bpu10I	CCTNAGC	2 cut(s)	176, 1532
Bpu14I	TTCGAA	2 cut(s)	1303, 1439
BpuEI	CTTGAG	2 cut(s)	182, 197
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	748
BsaAI	YACGTR	2 cut(s)	136, 1360
BsaHI	GRCGYC	2 cut(s)	78, 275
BsaJI	CCNNGG	5 cut(s)	66, 224, 278, 1328, 1749
BsaWI	WCCGGW	2 cut(s)	250, 330
BsaXI	ACNNNNNCTCC	6 cut(s)	148, 178, 255, 285, 401, 431
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 946, 1126, 1330
Bse118I	RCCGGY	1 cut(s)	1365
Bse1I	ACTGG	2 cut(s)	1131, 1506
Bse3DI	GCAATG	3 cut(s)	39, 896, 1596
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	4 cut(s)	359, 631, 1121, 1329
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	5 cut(s)	66, 224, 278, 1328, 1749
BseGI	GGATG	4 cut(s)	520, 1295, 1395, 1678
BseLI	CCNNNNNNNGG	4 cut(s)	72, 946, 1126, 1330
BseMI	GCAATG	3 cut(s)	39, 896, 1596
BseMII	CTCAG	2 cut(s)	190, 792
BseNI	ACTGG	2 cut(s)	1131, 1506
BsePI	GCGCGC	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	941, 1501
BseX3I	CGGCCG	1 cut(s)	382
BseXI	GCAGC	5 cut(s)	205, 853, 875, 1103, 1531
BseYI	CCCAGC	1 cut(s)	1712
Bsh1236I	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	384, 438, 1365, 1717
BshVI	ATCGAT	1 cut(s)	748
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	6 cut(s)	135, 393, 419, 497, 1279, 1501
BsiHKCI	CYCGRG	3 cut(s)	167, 563, 956
BsiSI	CCGG	6 cut(s)	73, 190, 251, 331, 420, 1366
BslFI	GGGAC	3 cut(s)	22, 89, 1198
BslI	CCNNNNNNNGG	4 cut(s)	72, 946, 1126, 1330
BsmAI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BsmBI	CGTCTC	1 cut(s)	1232
BsmFI	GGGAC	3 cut(s)	22, 89, 1198
BsnI	GGCC	4 cut(s)	384, 438, 1365, 1717
BsoBI	CYCGRG	3 cut(s)	167, 563, 956
Bsp119I	TTCGAA	2 cut(s)	1303, 1439
Bsp1286I	GDGCHC	7 cut(s)	135, 393, 419, 497, 941, 1279, 1501
Bsp13I	TCCGGA	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	5 cut(s)	184, 230, 373, 381, 700
BspANI	GGCC	4 cut(s)	384, 438, 1365, 1717
BspCNI	CTCAG	2 cut(s)	189, 791
BspDI	ATCGAT	1 cut(s)	748
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
BspLI	GGNNCC	5 cut(s)	188, 736, 1028, 1564, 1755
BspMAI	CTGCAG	2 cut(s)	464, 1461
BspPI	GGATC	8 cut(s)	597, 690, 891, 1557, 1570, 1643, 1748, 1761
BspT104I	TTCGAA	2 cut(s)	1303, 1439
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	3 cut(s)	39, 896, 1596
BsrFI	RCCGGY	1 cut(s)	1365
BsrI	ACTGG	2 cut(s)	1131, 1506
BssAI	RCCGGY	1 cut(s)	1365
BssECI	CCNNGG	5 cut(s)	66, 224, 278, 1328, 1749
BssHII	GCGCGC	1 cut(s)	452
BssNI	GRCGYC	2 cut(s)	78, 275
BssT1I	CCWWGG	3 cut(s)	66, 278, 1749
Bst2UI	CCWGG	4 cut(s)	359, 631, 1121, 1329
Bst4CI	ACNGT	4 cut(s)	102, 559, 655, 1232
Bst6I	CTCTTC	2 cut(s)	1016, 1230
BstACI	GRCGYC	2 cut(s)	78, 275
BstAFI	CTTAAG	1 cut(s)	401
BstBAI	YACGTR	2 cut(s)	136, 1360
BstBI	TTCGAA	2 cut(s)	1303, 1439
BstC8I	GCNNGC	3 cut(s)	131, 454, 543
BstDEI	CTNAG	5 cut(s)	176, 778, 1352, 1451, 1532
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	520, 1295, 1395, 1678
BstFNI	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
BstHHI	GCGC	7 cut(s)	121, 129, 148, 373, 454, 456, 1531
BstMAI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
BstNI	CCWGG	4 cut(s)	359, 631, 1121, 1329
BstNSI	RCATGY	1 cut(s)	1150
BstSCI	CCNGG	5 cut(s)	72, 357, 629, 1119, 1327
BstSFI	CTRYAG	2 cut(s)	460, 1457
BstSLI	GKGCMC	2 cut(s)	941, 1501
BstUI	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
BstV1I	GCAGC	5 cut(s)	205, 853, 875, 1103, 1531
BstV2I	GAAGAC	2 cut(s)	618, 918
BstX2I	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
BstYI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
BstZI	CGGCCG	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	748
BsuRI	GGCC	4 cut(s)	384, 438, 1365, 1717
BsuTUI	ATCGAT	1 cut(s)	748
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	3 cut(s)	127, 248, 433
BtsCI	GGATG	4 cut(s)	520, 1295, 1395, 1678
BtsI	GCAGTG	2 cut(s)	788, 1518
BtsIMutI	CAGTG	7 cut(s)	555, 651, 788, 906, 1495, 1499, 1518
Cac8I	GCNNGC	3 cut(s)	131, 454, 543
CfoI	GCGC	7 cut(s)	121, 129, 148, 373, 454, 456, 1531
Cfr10I	RCCGGY	1 cut(s)	1365
Cfr13I	GGNCC	4 cut(s)	70, 474, 1363, 1715
ClaI	ATCGAT	1 cut(s)	748
CseI	GACGC	3 cut(s)	86, 125, 283
Csp6I	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
CviAII	CATG	5 cut(s)	41, 279, 536, 704, 1147
CviQI	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
DdeI	CTNAG	5 cut(s)	176, 778, 1352, 1451, 1532
DraI	TTTAAA	1 cut(s)	573
DrdI	GACNNNNNNGTC	1 cut(s)	440
DriI	GACNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	382
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	1016, 1230
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	2 cut(s)	1016, 1230
EciI	GGCGGA	1 cut(s)	689
Ecl136II	GAGCTC	3 cut(s)	391, 495, 1277
EclXI	CGGCCG	1 cut(s)	382
Eco130I	CCWWGG	3 cut(s)	66, 278, 1749
Eco24I	GRGCYC	3 cut(s)	393, 497, 1279
Eco32I	GATATC	1 cut(s)	1156
Eco47I	GGWCC	2 cut(s)	70, 474
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	3 cut(s)	391, 495, 1277
Eco57I	CTGAAG	4 cut(s)	227, 930, 1040, 1471
Eco72I	CACGTG	1 cut(s)	136
Eco88I	CYCGRG	3 cut(s)	167, 563, 956
EcoICRI	GAGCTC	3 cut(s)	391, 495, 1277
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	4 cut(s)	357, 629, 1119, 1327
EcoRV	GATATC	1 cut(s)	1156
EcoT14I	CCWWGG	3 cut(s)	66, 278, 1749
EcoT22I	ATGCAT	2 cut(s)	898, 1168
EcoT38I	GRGCYC	3 cut(s)	393, 497, 1279
ErhI	CCWWGG	3 cut(s)	66, 278, 1749
Esp3I	CGTCTC	1 cut(s)	1232
FaeI	CATG	5 cut(s)	44, 282, 539, 707, 1150
FalI	AAGNNNNNCTT	2 cut(s)	1297, 1329
FaqI	GGGAC	3 cut(s)	22, 89, 1198
FatI	CATG	5 cut(s)	40, 278, 535, 703, 1146
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	7 cut(s)	194, 231, 382, 864, 867, 1117, 1520
FokI	GGATG	4 cut(s)	527, 1302, 1402, 1665
FriOI	GRGCYC	3 cut(s)	393, 497, 1279
Fsp4HI	GCNGC	7 cut(s)	194, 231, 382, 864, 867, 1117, 1520
FspBI	CTAG	4 cut(s)	365, 1397, 1466, 1629
GlaI	GCGC	7 cut(s)	120, 128, 147, 372, 453, 455, 1530
GluI	GCNGC	7 cut(s)	194, 231, 382, 864, 867, 1117, 1520
GsaI	CCCAGC	1 cut(s)	1716
GsuI	CTGGAG	2 cut(s)	380, 1148
HaeIII	GGCC	4 cut(s)	384, 438, 1365, 1717
HapII	CCGG	6 cut(s)	73, 190, 251, 331, 420, 1366
HgaI	GACGC	3 cut(s)	86, 125, 283
HhaI	GCGC	7 cut(s)	121, 129, 148, 373, 454, 456, 1531
Hin1I	GRCGYC	2 cut(s)	78, 275
Hin1II	CATG	5 cut(s)	44, 282, 539, 707, 1150
Hin6I	GCGC	7 cut(s)	119, 127, 146, 371, 452, 454, 1529
HinP1I	GCGC	7 cut(s)	119, 127, 146, 371, 452, 454, 1529
HindIII	AAGCTT	1 cut(s)	1298
HpaII	CCGG	6 cut(s)	73, 190, 251, 331, 420, 1366
HphI	GGTGA	2 cut(s)	536, 1421
Hpy166II	GTNNAC	3 cut(s)	445, 1144, 1499
Hpy8I	GTNNAC	3 cut(s)	445, 1144, 1499
Hpy99I	CGWCG	2 cut(s)	102, 163
HpyAV	CCTTC	4 cut(s)	310, 748, 1299, 1435
HpyCH4III	ACNGT	4 cut(s)	102, 559, 655, 1232
HpyCH4IV	ACGT	3 cut(s)	15, 135, 1359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
HpyF3I	CTNAG	5 cut(s)	176, 778, 1352, 1451, 1532
HpySE526I	ACGT	3 cut(s)	15, 135, 1359
Hsp92I	GRCGYC	2 cut(s)	78, 275
Hsp92II	CATG	5 cut(s)	44, 282, 539, 707, 1150
HspAI	GCGC	7 cut(s)	119, 127, 146, 371, 452, 454, 1529
Kpn2I	TCCGGA	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	760
LmnI	GCTCC	5 cut(s)	361, 396, 422, 461, 1032
Lsp1109I	GCAGC	5 cut(s)	205, 853, 875, 1103, 1531
LweI	GCATC	7 cut(s)	36, 1175, 1280, 1380, 1408, 1506, 1687
MaeI	CTAG	4 cut(s)	365, 1397, 1466, 1629
MaeII	ACGT	3 cut(s)	15, 135, 1359
MaeIII	GTNAC	4 cut(s)	136, 271, 375, 1355
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
MhlI	GDGCHC	7 cut(s)	135, 393, 419, 497, 941, 1279, 1501
MluCI	AATT	9 cut(s)	291, 501, 634, 660, 675, 722, 927, 1032, 1735
MlyI	GAGTC	5 cut(s)	56, 157, 308, 1180, 1588
MmeI	TCCRAC	2 cut(s)	378, 861
Mph1103I	ATGCAT	2 cut(s)	898, 1168
MroI	TCCGGA	1 cut(s)	330
MseI	TTAA	8 cut(s)	240, 306, 402, 572, 647, 926, 1638, 1770
MspA1I	CMGCKG	2 cut(s)	866, 1522
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	6 cut(s)	73, 190, 251, 331, 420, 1366
MspR9I	CCNGG	5 cut(s)	74, 359, 631, 1121, 1329
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	4 cut(s)	359, 631, 1121, 1329
MvnI	CGCG	8 cut(s)	119, 127, 129, 146, 373, 381, 452, 454
MwoI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	278
NlaIII	CATG	5 cut(s)	44, 282, 539, 707, 1150
NlaIV	GGNNCC	5 cut(s)	188, 736, 1028, 1564, 1755
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	136, 271, 375
NsiI	ATGCAT	2 cut(s)	898, 1168
NspI	RCATGY	1 cut(s)	1150
NspV	TTCGAA	2 cut(s)	1303, 1439
PaeR7I	CTCGAG	2 cut(s)	563, 956
PauI	GCGCGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	1146
PfeI	GAWTC	5 cut(s)	220, 350, 600, 1412, 1621
PkrI	GCNGC	7 cut(s)	195, 232, 383, 865, 868, 1118, 1521
PleI	GAGTC	5 cut(s)	56, 157, 307, 1180, 1588
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	5 cut(s)	56, 157, 307, 1180, 1588
Ppu21I	YACGTR	2 cut(s)	136, 1360
PpuMI	RGGWCCY	1 cut(s)	474
PscI	ACATGT	1 cut(s)	1146
Psp124BI	GAGCTC	3 cut(s)	393, 497, 1279
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	4 cut(s)	357, 629, 1119, 1327
PspCI	CACGTG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	1712
PspGI	CCWGG	4 cut(s)	357, 629, 1119, 1327
PspN4I	GGNNCC	5 cut(s)	188, 736, 1028, 1564, 1755
PspPI	GGNCC	4 cut(s)	70, 474, 1363, 1715
PspPPI	RGGWCCY	1 cut(s)	474
PstI	CTGCAG	2 cut(s)	464, 1461
PsuI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
PteI	GCGCGC	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	866, 1522
RsaI	GTAC	7 cut(s)	107, 561, 776, 922, 1133, 1538, 1556
RsaNI	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
SacI	GAGCTC	3 cut(s)	393, 497, 1279
SaqAI	TTAA	8 cut(s)	240, 306, 402, 572, 647, 926, 1638, 1770
SatI	GCNGC	7 cut(s)	194, 231, 382, 864, 867, 1117, 1520
Sau96I	GGNCC	4 cut(s)	70, 474, 1363, 1715
SbfI	CCTGCAGG	1 cut(s)	464
ScaI	AGTACT	2 cut(s)	776, 1133
SchI	GAGTC	5 cut(s)	56, 157, 308, 1180, 1588
ScrFI	CCNGG	5 cut(s)	74, 359, 631, 1121, 1329
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	7 cut(s)	135, 393, 419, 497, 941, 1279, 1501
SfaNI	GCATC	7 cut(s)	36, 1175, 1280, 1380, 1408, 1506, 1687
SfcI	CTRYAG	2 cut(s)	460, 1457
Sfr274I	CTCGAG	2 cut(s)	563, 956
SfuI	TTCGAA	2 cut(s)	1303, 1439
SinI	GGWCC	2 cut(s)	70, 474
SlaI	CTCGAG	2 cut(s)	563, 956
SmlI	CTYRAG	5 cut(s)	197, 212, 401, 563, 956
SmoI	CTYRAG	5 cut(s)	197, 212, 401, 563, 956
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	9 cut(s)	291, 501, 634, 660, 675, 722, 927, 1032, 1735
SsiI	CCGC	5 cut(s)	184, 230, 373, 381, 700
SspI	AATATT	1 cut(s)	1612
SspMI	CTAG	4 cut(s)	365, 1397, 1466, 1629
SstI	GAGCTC	3 cut(s)	393, 497, 1279
StyD4I	CCNGG	5 cut(s)	72, 357, 629, 1119, 1327
StyI	CCWWGG	3 cut(s)	66, 278, 1749
TaaI	ACNGT	4 cut(s)	102, 559, 655, 1232
TaiI	ACGT	3 cut(s)	18, 138, 1362
TasI	AATT	9 cut(s)	291, 501, 634, 660, 675, 722, 927, 1032, 1735
TatI	WGTACW	4 cut(s)	559, 774, 920, 1131
TauI	GCSGC	2 cut(s)	233, 384
TfiI	GAWTC	5 cut(s)	220, 350, 600, 1412, 1621
Tru1I	TTAA	8 cut(s)	240, 306, 402, 572, 647, 926, 1638, 1770
Tru9I	TTAA	8 cut(s)	240, 306, 402, 572, 647, 926, 1638, 1770
TscAI	CASTG	7 cut(s)	562, 658, 795, 913, 1495, 1506, 1518
TseFI	GTSAC	3 cut(s)	136, 271, 375
TseI	GCWGC	5 cut(s)	193, 863, 866, 1116, 1519
Tsp45I	GTSAC	3 cut(s)	136, 271, 375
TspDTI	ATGAA	2 cut(s)	38, 852
TspGWI	ACGGA	2 cut(s)	602, 1313
TspRI	CASTG	7 cut(s)	562, 658, 795, 913, 1495, 1506, 1518
Vha464I	CTTAAG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	1497
VpaK11BI	GGWCC	2 cut(s)	70, 474
XapI	RAATTY	3 cut(s)	675, 722, 1735
XceI	RCATGY	1 cut(s)	1150
XhoI	CTCGAG	2 cut(s)	563, 956
XmiI	GTMKAC	1 cut(s)	1143
XspI	CTAG	4 cut(s)	365, 1397, 1466, 1629
ZrmI	AGTACT	2 cut(s)	776, 1133
Zsp2I	ATGCAT	2 cut(s)	898, 1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.