Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005027

Physical Location & Seq

Genomic Coordinates Reverse (-)

45449102 .. 45452463

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGAAGATCGAAGCGTGAGAATGAATACTGGAATGTCCCATGTGATGCCGTATATCAAAGACTCGAAGGACCGGGACGCCGTGTCGTTGGTGTGCCGACGGTGGTACGAGCTGGACGCGCTCACGCGCGAGCACGTGACCATCGCGCTCTGCTACACGACGACTCCCGAGAGGCTCAGGAGGCGGTTCCGGCAGCTCAAGTCGCTGAAGCTCAAGGGGAAGCCGAGGGCGGCGATGTTTAATCTGATACCGGAGGATTGGGGAGGCTTTGTGACGCCGTGGGTGGAGGAGATTGCCGAGTCGTTTAAGAGCTTGAAGGCTTTGCATTTCCGGAGAATGATTGTGAGGGATTCCGACTTGGAGCTATTGGCGCGGTCACGCGGCCGTGAGCTCCAATCGCTTAAGCTCGACAAGTGCTCCGGGTTTTCGACTGACGGCCTTGTCCACATCGCCCGCTCCTGCAGGGATTTGAGGACCTTGTTTTTGGAGGAGAGCTGGATAATTGAGAAAGAGGATGAGTGGGGTGAATGGCTACATGAGCTTGCTACAAACAACACTGTACTCGAGACTTTAAACTTCTATATGACGGATCTTGGCAGATTCAGATTTGAAGACCTTGAATTCATAGCGAGGAATTGCCCCTCCTTAACCACTGTGAAAATTAGCGATTGTGAAATTTTGGATCTTCTGGGTTTCTTCTGTCATGCAACTGCTTTAGAAGAATTTTGTGGAGGTTCCTTTGATGATCGATCAGAGAATGATCAATCAGAGAAGTACTCAGTTGTATCGCTGCCACGAAAGATATGTCTTTTGGGTCTAACGATGATGGGGAAGAATGAAATGCCTATTGTATTCCCATTAGCAGCTGCCCTCAAAAAGTTGGATCTCCTCTATGCATTGCTCGACACTGAAGACCATTGTACTTTAATTCAAAAGTGCCCCAACTTGGAAGTTCTTGAGACAAGGAATGTCATTGGAGATAGAGGATTAGAAGTCCTTGCTCGGAGTTGCAAGAGACTGAAGAGGCTTCGAATTGAGCGAGGTGCTGATGAGCATGGTATGGAGGACGAAGATGGTGTTGTTTCACAGAGGGGTCTGATGGCTTTGGCACAGGGCTGCCAGGAACTGGAGTACTTGGCTGTCTACGTATCAGATATCACAAATGCATCTCTGGAATACATTGGGACTCACTCTAAAAATCTAAATGATTTTCGCCTTGTCCTGCTTGACCGTGAAGAGACGATAACAGATTTACCCCTTGACAATGGCGTTCGAGCTCTATTGAGGGGATGCCAAAAGCTTCGAAGGTTTGCTTTGTATCTCCGTCCTGGGGGTTTGACTGATTTGGGGCTTAGTTACGTGGGCCAGTATAGTCAAAATGTGAGATGGATGCTTCTAGGTTATGTTGGTGAATCTGATGGAGGGCTTTTGGAGTTTTCAAAGGGTTGCCGTAGTCTGCAGAAACTAGAAATGAGGGGCTGTTGCTTCAGTGAGCGTGCACTGGCTGTTGCAGTGATGCAGCTGACTGCGCTAAGGTACTTGTGGGTGCAAGGGTACAGGGGATCCCCAACGGGTCGTGATCTTTTGGCAATGGCTCGCCCGTATTGGAATATTGAGTTGATTCCTCCTAGACGAGTTGATGTTCTTGATCTGATCGGGGAGGCAGTAGTGGTTGAGCATCCAGCTCATATTCTTGCATACTACTCTCTTGCTGGACCAAGAACAGATTTTCCAGATACTGTTATCCCCTTGGATCCACAGTCTTTGATTAACGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box-like

Protein Analysis

592

Amino Acids

67.5

Weight (kDa)

5.82

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	13 - 45	9.5e-19	F-box
Transp_inhibit	PF18791	65 - 110	1.3e-22	Transport inhibitor response 1 protein domain
DUF7885	PF25372	96 - 406	5.6e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39940
fragaria_vesca	FvH4_7g24000 FvH4_7g24000 FvH4_7g24000
malus_domestica	MD01G1147000.v1.1 MD07G1213600.v1.1
prunus_persica	Prupe.2G246000_v2.0.a1
pyrus_communis	pycom01g16610 pycom07g19640
rosa_chinensis	RchiOBHm_Chr1g0369351 RchiOBHm_Chr1g0369371 RchiOBHm_Chr1g0369381
rosa_laevigata	RLG00000027134 RLG00000027135
rosa_multiflora	Rmu_sc0001482.1_g000008 Rmu_sc0003612.1_g000021
rosa_roxburghii	Rroxscaffold_4G00287690 Rroxscaffold_4G00287710
rosa_rugosa	Rorug01G0349700 Rorug01G0349700
rosa_samantha	Rh1AG357000 Rh1AG357300 Rh1BG321000 Rh1BG321300 Rh1CG335000 Rh1CG335200 Rh1DG351700 Rh1DG352000
rosa_wichuraiana	Rw1G031520 Rw1G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	1126
AccBSI	CCGCTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	1143
AccII	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	5 cut(s)	184, 230, 373, 381, 454
AclWI	GGATC	7 cut(s)	597, 690, 891, 1557, 1570, 1748, 1761
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	620, 675, 722
AcuI	CTGAAG	4 cut(s)	227, 930, 1040, 1471
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	78, 275
AfaI	GTAC	7 cut(s)	107, 561, 776, 922, 1133, 1538, 1556
AfiI	CCNNNNNNNGG	3 cut(s)	946, 1126, 1330
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	1773
AgsI	TTSAA	5 cut(s)	316, 611, 620, 932, 1440
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	1119, 1327
AloI	GAACNNNNNNTCC	2 cut(s)	1714, 1746
Alw21I	GWGCWC	5 cut(s)	135, 393, 419, 1279, 1501
Alw26I	GTCTC	4 cut(s)	560, 953, 1009, 1232
Alw44I	GTGCAC	1 cut(s)	1497
AlwI	GGATC	7 cut(s)	597, 690, 891, 1557, 1570, 1748, 1761
AlwNI	CAGNNNCTG	2 cut(s)	1126, 1739
Ama87I	CYCGRG	2 cut(s)	167, 563
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	3 cut(s)	382, 436, 1363
ApaLI	GTGCAC	1 cut(s)	1497
ApeKI	GCWGC	6 cut(s)	193, 790, 863, 866, 1116, 1519
ApoI	RAATTY	3 cut(s)	620, 675, 722
ArsI	GACNNNNNNTTYG	4 cut(s)	466, 498, 790, 822
AspLEI	GCGC	5 cut(s)	121, 129, 148, 373, 1531
AspS9I	GGNCC	4 cut(s)	70, 474, 1363, 1715
AsuC2I	CCSGG	2 cut(s)	74, 421
AsuHPI	GGTGA	2 cut(s)	536, 1421
AsuII	TTCGAA	2 cut(s)	1030, 1303
AvaI	CYCGRG	2 cut(s)	167, 563
AvaII	GGWCC	3 cut(s)	70, 474, 1715
BaeGI	GKGCMC	2 cut(s)	941, 1501
BamHI	GGATCC	2 cut(s)	1562, 1753
BanII	GRGCYC	2 cut(s)	393, 1279
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	618, 918
Bbv12I	GWGCWC	5 cut(s)	135, 393, 419, 1279, 1501
BbvI	GCAGC	6 cut(s)	205, 777, 853, 875, 1103, 1531
BccI	CCATC	6 cut(s)	149, 820, 1067, 1093, 1380, 1412
BceAI	ACGGC	6 cut(s)	34, 65, 262, 369, 451, 1434
BciT130I	CCWGG	2 cut(s)	1121, 1329
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	2 cut(s)	74, 421
BcoDI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BfaI	CTAG	3 cut(s)	1397, 1466, 1629
BfmI	CTRYAG	2 cut(s)	460, 1457
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	8 cut(s)	194, 231, 382, 791, 864, 867, 1117, 1520
BlsI	GCNGC	8 cut(s)	195, 232, 383, 792, 865, 868, 1118, 1521
BmcAI	AGTACT	2 cut(s)	776, 1133
Bme1390I	CCNGG	4 cut(s)	74, 421, 1121, 1329
Bme18I	GGWCC	3 cut(s)	70, 474, 1715
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	2 cut(s)	167, 563
BmgT120I	GGNCC	4 cut(s)	70, 474, 1363, 1715
BmiI	GGNNCC	4 cut(s)	188, 736, 1564, 1755
BmrFI	CCNGG	4 cut(s)	74, 421, 1121, 1329
BmsI	GCATC	6 cut(s)	36, 1175, 1280, 1380, 1506, 1687
BpiI	GAAGAC	2 cut(s)	618, 918
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BpmI	CTGGAG	1 cut(s)	1148
Bpu10I	CCTNAGC	2 cut(s)	176, 1532
Bpu14I	TTCGAA	2 cut(s)	1030, 1303
BpuEI	CTTGAG	3 cut(s)	182, 197, 977
BpuMI	CCSGG	2 cut(s)	74, 421
Bsa29I	ATCGAT	1 cut(s)	748
BsaAI	YACGTR	3 cut(s)	136, 1147, 1360
BsaHI	GRCGYC	2 cut(s)	78, 275
BsaJI	CCNNGG	4 cut(s)	224, 278, 1328, 1749
BsaWI	WCCGGW	2 cut(s)	250, 330
BsaXI	ACNNNNNCTCC	6 cut(s)	148, 178, 255, 285, 401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	946, 1126, 1330
Bse1I	ACTGG	4 cut(s)	34, 1131, 1366, 1506
Bse3DI	GCAATG	2 cut(s)	896, 1596
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	1121, 1329
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	4 cut(s)	224, 278, 1328, 1749
BseGI	GGATG	4 cut(s)	520, 1295, 1395, 1678
BseLI	CCNNNNNNNGG	3 cut(s)	946, 1126, 1330
BseMI	GCAATG	2 cut(s)	896, 1596
BseMII	CTCAG	2 cut(s)	190, 792
BseNI	ACTGG	4 cut(s)	34, 1131, 1366, 1506
BseRI	GAGGAG	3 cut(s)	302, 503, 878
BseSI	GKGCMC	2 cut(s)	941, 1501
BseX3I	CGGCCG	1 cut(s)	382
BseXI	GCAGC	6 cut(s)	205, 777, 853, 875, 1103, 1531
Bsh1236I	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	384, 438, 1365
BshVI	ATCGAT	1 cut(s)	748
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	5 cut(s)	135, 393, 419, 1279, 1501
BsiHKCI	CYCGRG	2 cut(s)	167, 563
BsiSI	CCGG	5 cut(s)	73, 190, 251, 331, 420
BslFI	GGGAC	3 cut(s)	22, 89, 1198
BslI	CCNNNNNNNGG	3 cut(s)	946, 1126, 1330
BsmAI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BsmBI	CGTCTC	1 cut(s)	1232
BsmFI	GGGAC	3 cut(s)	22, 89, 1198
BsnI	GGCC	3 cut(s)	384, 438, 1365
BsoBI	CYCGRG	2 cut(s)	167, 563
Bsp119I	TTCGAA	2 cut(s)	1030, 1303
Bsp1286I	GDGCHC	6 cut(s)	135, 393, 419, 941, 1279, 1501
Bsp13I	TCCGGA	1 cut(s)	330
BspACI	CCGC	5 cut(s)	184, 230, 373, 381, 454
BspANI	GGCC	3 cut(s)	384, 438, 1365
BspCNI	CTCAG	2 cut(s)	189, 791
BspDI	ATCGAT	1 cut(s)	748
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
BspLI	GGNNCC	4 cut(s)	188, 736, 1564, 1755
BspMAI	CTGCAG	2 cut(s)	464, 1461
BspPI	GGATC	7 cut(s)	597, 690, 891, 1557, 1570, 1748, 1761
BspT104I	TTCGAA	2 cut(s)	1030, 1303
BspTI	CTTAAG	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	896, 1596
BsrI	ACTGG	4 cut(s)	34, 1131, 1366, 1506
BssECI	CCNNGG	4 cut(s)	224, 278, 1328, 1749
BssNI	GRCGYC	2 cut(s)	78, 275
BssT1I	CCWWGG	1 cut(s)	1749
Bst2UI	CCWGG	2 cut(s)	1121, 1329
Bst4CI	ACNGT	6 cut(s)	102, 559, 655, 1232, 1741, 1761
Bst6I	CTCTTC	2 cut(s)	1016, 1230
BstACI	GRCGYC	2 cut(s)	78, 275
BstAFI	CTTAAG	1 cut(s)	401
BstBAI	YACGTR	3 cut(s)	136, 1147, 1360
BstBI	TTCGAA	2 cut(s)	1030, 1303
BstC8I	GCNNGC	5 cut(s)	131, 454, 543, 1497, 1597
BstDEI	CTNAG	4 cut(s)	176, 778, 1352, 1532
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	520, 1295, 1395, 1678
BstFNI	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
BstHHI	GCGC	5 cut(s)	121, 129, 148, 373, 1531
BstMAI	GTCTC	4 cut(s)	560, 953, 1009, 1232
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
BstNI	CCWGG	2 cut(s)	1121, 1329
BstSCI	CCNGG	4 cut(s)	72, 419, 1119, 1327
BstSFI	CTRYAG	2 cut(s)	460, 1457
BstSLI	GKGCMC	2 cut(s)	941, 1501
BstSNI	TACGTA	1 cut(s)	1147
BstUI	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
BstV1I	GCAGC	6 cut(s)	205, 777, 853, 875, 1103, 1531
BstV2I	GAAGAC	2 cut(s)	618, 918
BstX2I	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
BstYI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
BstZI	CGGCCG	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	384, 438, 1365
BsuTUI	ATCGAT	1 cut(s)	748
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	3 cut(s)	127, 248, 433
BtsCI	GGATG	4 cut(s)	520, 1295, 1395, 1678
BtsI	GCAGTG	1 cut(s)	1518
BtsIMutI	CAGTG	6 cut(s)	555, 651, 906, 1495, 1499, 1518
Cac8I	GCNNGC	5 cut(s)	131, 454, 543, 1497, 1597
CaiI	CAGNNNCTG	2 cut(s)	1126, 1739
CfoI	GCGC	5 cut(s)	121, 129, 148, 373, 1531
Cfr13I	GGNCC	4 cut(s)	70, 474, 1363, 1715
ClaI	ATCGAT	1 cut(s)	748
CseI	GACGC	3 cut(s)	86, 125, 283
Csp6I	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
CspCI	CAANNNNNGTGG	1 cut(s)	1746
CviAII	CATG	4 cut(s)	41, 536, 704, 1055
CviQI	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
DdeI	CTNAG	4 cut(s)	176, 778, 1352, 1532
DraI	TTTAAA	1 cut(s)	573
DrdI	GACNNNNNNGTC	1 cut(s)	440
DriI	GACNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	382
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	1016, 1230
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	2 cut(s)	1016, 1230
Ecl136II	GAGCTC	2 cut(s)	391, 1277
EclXI	CGGCCG	1 cut(s)	382
Eco105I	TACGTA	1 cut(s)	1147
Eco130I	CCWWGG	1 cut(s)	1749
Eco24I	GRGCYC	2 cut(s)	393, 1279
Eco32I	GATATC	1 cut(s)	1156
Eco47I	GGWCC	3 cut(s)	70, 474, 1715
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	2 cut(s)	391, 1277
Eco57I	CTGAAG	4 cut(s)	227, 930, 1040, 1471
Eco72I	CACGTG	1 cut(s)	136
Eco88I	CYCGRG	2 cut(s)	167, 563
EcoICRI	GAGCTC	2 cut(s)	391, 1277
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	1119, 1327
EcoRV	GATATC	1 cut(s)	1156
EcoT14I	CCWWGG	1 cut(s)	1749
EcoT22I	ATGCAT	2 cut(s)	898, 1168
EcoT38I	GRGCYC	2 cut(s)	393, 1279
ErhI	CCWWGG	1 cut(s)	1749
Esp3I	CGTCTC	1 cut(s)	1232
FaeI	CATG	4 cut(s)	44, 539, 707, 1058
FalI	AAGNNNNNCTT	2 cut(s)	1297, 1329
FaqI	GGGAC	3 cut(s)	22, 89, 1198
FatI	CATG	4 cut(s)	40, 535, 703, 1054
FauI	CCCGC	1 cut(s)	461
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	8 cut(s)	194, 231, 382, 791, 864, 867, 1117, 1520
FokI	GGATG	4 cut(s)	527, 1302, 1402, 1665
FriOI	GRGCYC	2 cut(s)	393, 1279
Fsp4HI	GCNGC	8 cut(s)	194, 231, 382, 791, 864, 867, 1117, 1520
FspBI	CTAG	3 cut(s)	1397, 1466, 1629
GlaI	GCGC	5 cut(s)	120, 128, 147, 372, 1530
GluI	GCNGC	8 cut(s)	194, 231, 382, 791, 864, 867, 1117, 1520
GsuI	CTGGAG	1 cut(s)	1148
HaeIII	GGCC	3 cut(s)	384, 438, 1365
HapII	CCGG	5 cut(s)	73, 190, 251, 331, 420
HgaI	GACGC	3 cut(s)	86, 125, 283
HhaI	GCGC	5 cut(s)	121, 129, 148, 373, 1531
Hin1I	GRCGYC	2 cut(s)	78, 275
Hin1II	CATG	4 cut(s)	44, 539, 707, 1058
Hin6I	GCGC	5 cut(s)	119, 127, 146, 371, 1529
HinP1I	GCGC	5 cut(s)	119, 127, 146, 371, 1529
HindIII	AAGCTT	1 cut(s)	1298
HinfI	GANTC	8 cut(s)	62, 163, 299, 350, 600, 1186, 1412, 1621
HpaII	CCGG	5 cut(s)	73, 190, 251, 331, 420
HphI	GGTGA	2 cut(s)	536, 1421
Hpy166II	GTNNAC	3 cut(s)	445, 1144, 1499
Hpy188III	TCNNGA	9 cut(s)	167, 178, 331, 565, 956, 1172, 1577, 1646, 1733
Hpy8I	GTNNAC	3 cut(s)	445, 1144, 1499
Hpy99I	CGWCG	2 cut(s)	102, 163
HpyAV	CCTTC	3 cut(s)	61, 310, 1299
HpyCH4III	ACNGT	6 cut(s)	102, 559, 655, 1232, 1741, 1761
HpyCH4IV	ACGT	3 cut(s)	135, 1146, 1359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
HpyF3I	CTNAG	4 cut(s)	176, 778, 1352, 1532
HpySE526I	ACGT	3 cut(s)	135, 1146, 1359
Hsp92I	GRCGYC	2 cut(s)	78, 275
Hsp92II	CATG	4 cut(s)	44, 539, 707, 1058
HspAI	GCGC	5 cut(s)	119, 127, 146, 371, 1529
Kpn2I	TCCGGA	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	760
LmnI	GCTCC	4 cut(s)	361, 396, 422, 461
Lsp1109I	GCAGC	6 cut(s)	205, 777, 853, 875, 1103, 1531
LweI	GCATC	6 cut(s)	36, 1175, 1280, 1380, 1506, 1687
MaeI	CTAG	3 cut(s)	1397, 1466, 1629
MaeII	ACGT	3 cut(s)	135, 1146, 1359
MaeIII	GTNAC	4 cut(s)	136, 271, 375, 1355
MbiI	CCGCTC	1 cut(s)	456
MflI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
MhlI	GDGCHC	6 cut(s)	135, 393, 419, 941, 1279, 1501
MluCI	AATT	8 cut(s)	501, 620, 634, 660, 675, 722, 927, 1032
MluI	ACGCGT	1 cut(s)	1773
MlyI	GAGTC	4 cut(s)	56, 157, 308, 1180
MmeI	TCCRAC	2 cut(s)	378, 861
Mph1103I	ATGCAT	2 cut(s)	898, 1168
MroI	TCCGGA	1 cut(s)	330
MseI	TTAA	7 cut(s)	240, 306, 402, 572, 647, 926, 1770
MspA1I	CMGCKG	2 cut(s)	866, 1522
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	5 cut(s)	73, 190, 251, 331, 420
MspR9I	CCNGG	4 cut(s)	74, 421, 1121, 1329
MvaI	CCWGG	2 cut(s)	1121, 1329
MvnI	CGCG	7 cut(s)	119, 127, 129, 146, 373, 381, 1775
MwoI	GCNNNNNNNGC	8 cut(s)	118, 181, 190, 202, 370, 397, 538, 1528
NciI	CCSGG	2 cut(s)	74, 421
NlaIII	CATG	4 cut(s)	44, 539, 707, 1058
NlaIV	GGNNCC	4 cut(s)	188, 736, 1564, 1755
NmeAIII	GCCGAG	2 cut(s)	249, 322
NmuCI	GTSAC	3 cut(s)	136, 271, 375
NsiI	ATGCAT	2 cut(s)	898, 1168
NspV	TTCGAA	2 cut(s)	1030, 1303
PaeR7I	CTCGAG	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	1036
PfeI	GAWTC	4 cut(s)	350, 600, 1412, 1621
PflMI	CCANNNNNTGG	1 cut(s)	1126
PkrI	GCNGC	8 cut(s)	195, 232, 383, 792, 865, 868, 1118, 1521
PleI	GAGTC	4 cut(s)	56, 157, 307, 1180
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	4 cut(s)	56, 157, 307, 1180
Ppu21I	YACGTR	3 cut(s)	136, 1147, 1360
PpuMI	RGGWCCY	1 cut(s)	474
Psp124BI	GAGCTC	2 cut(s)	393, 1279
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	1119, 1327
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	1119, 1327
PspN4I	GGNNCC	4 cut(s)	188, 736, 1564, 1755
PspPI	GGNCC	4 cut(s)	70, 474, 1363, 1715
PspPPI	RGGWCCY	1 cut(s)	474
PstI	CTGCAG	2 cut(s)	464, 1461
PstNI	CAGNNNCTG	2 cut(s)	1126, 1739
PsuI	RGATCY	5 cut(s)	589, 682, 883, 1562, 1753
PvuII	CAGCTG	2 cut(s)	866, 1522
RsaI	GTAC	7 cut(s)	107, 561, 776, 922, 1133, 1538, 1556
RsaNI	GTAC	7 cut(s)	106, 560, 775, 921, 1132, 1537, 1555
SacI	GAGCTC	2 cut(s)	393, 1279
SaqAI	TTAA	7 cut(s)	240, 306, 402, 572, 647, 926, 1770
SatI	GCNGC	8 cut(s)	194, 231, 382, 791, 864, 867, 1117, 1520
Sau96I	GGNCC	4 cut(s)	70, 474, 1363, 1715
SbfI	CCTGCAGG	1 cut(s)	464
ScaI	AGTACT	2 cut(s)	776, 1133
SchI	GAGTC	4 cut(s)	56, 157, 308, 1180
ScrFI	CCNGG	4 cut(s)	74, 421, 1121, 1329
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	6 cut(s)	135, 393, 419, 941, 1279, 1501
SfaNI	GCATC	6 cut(s)	36, 1175, 1280, 1380, 1506, 1687
SfcI	CTRYAG	2 cut(s)	460, 1457
Sfr274I	CTCGAG	1 cut(s)	563
SfuI	TTCGAA	2 cut(s)	1030, 1303
SinI	GGWCC	3 cut(s)	70, 474, 1715
SlaI	CTCGAG	1 cut(s)	563
SmlI	CTYRAG	5 cut(s)	197, 212, 401, 563, 956
SmoI	CTYRAG	5 cut(s)	197, 212, 401, 563, 956
SnaBI	TACGTA	1 cut(s)	1147
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	8 cut(s)	501, 620, 634, 660, 675, 722, 927, 1032
SsiI	CCGC	5 cut(s)	184, 230, 373, 381, 454
SspI	AATATT	1 cut(s)	1612
SspMI	CTAG	3 cut(s)	1397, 1466, 1629
SstI	GAGCTC	2 cut(s)	393, 1279
StyD4I	CCNGG	4 cut(s)	72, 419, 1119, 1327
StyI	CCWWGG	1 cut(s)	1749
TaaI	ACNGT	6 cut(s)	102, 559, 655, 1232, 1741, 1761
TaiI	ACGT	3 cut(s)	138, 1149, 1362
TasI	AATT	8 cut(s)	501, 620, 634, 660, 675, 722, 927, 1032
TatI	WGTACW	4 cut(s)	559, 774, 920, 1131
TauI	GCSGC	2 cut(s)	233, 384
TfiI	GAWTC	4 cut(s)	350, 600, 1412, 1621
Tru1I	TTAA	7 cut(s)	240, 306, 402, 572, 647, 926, 1770
Tru9I	TTAA	7 cut(s)	240, 306, 402, 572, 647, 926, 1770
TscAI	CASTG	6 cut(s)	562, 658, 913, 1495, 1506, 1518
TseFI	GTSAC	3 cut(s)	136, 271, 375
TseI	GCWGC	6 cut(s)	193, 790, 863, 866, 1116, 1519
Tsp45I	GTSAC	3 cut(s)	136, 271, 375
TspDTI	ATGAA	3 cut(s)	38, 613, 852
TspGWI	ACGGA	2 cut(s)	602, 1313
TspRI	CASTG	6 cut(s)	562, 658, 913, 1495, 1506, 1518
Van91I	CCANNNNNTGG	1 cut(s)	1126
Vha464I	CTTAAG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	1497
VpaK11BI	GGWCC	3 cut(s)	70, 474, 1715
XapI	RAATTY	3 cut(s)	620, 675, 722
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	1143
XspI	CTAG	3 cut(s)	1397, 1466, 1629
ZrmI	AGTACT	2 cut(s)	776, 1133
Zsp2I	ATGCAT	2 cut(s)	898, 1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.