Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005027

Physical Location & Seq

Genomic Coordinates Reverse (-)

59208837 .. 59209334

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAGGAATGGGATTTGAGGACCTTGTTTTTGGAGGAGAGCTCGATAATTGAGAAAGAGGATGAGTGGGGTGAATGGCTACATGAGCTTGCTACAAGCAACACTGTACTCGAGACTTTAAACTTCTATATGACGGATCTTGGCAGAATCAGATTTGAAGACCTTGAACTCATAGCCAGGAATTGCCCCTCCTTAACCACTGTGAAAATTAGCGATTGTGAAATTTTGGATCTTCTGGGTTTCTTCCGCCATGCAACTGCTTTAGAAGAATTTTGTGGAGGTTCCTTCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box-like

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

4.17

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39940
fragaria_vesca	FvH4_7g24000 FvH4_7g24000 FvH4_7g24000
malus_domestica	MD01G1147000.v1.1 MD07G1213600.v1.1
prunus_persica	Prupe.2G246000_v2.0.a1
pyrus_communis	pycom01g16610 pycom07g19640
rosa_chinensis	RchiOBHm_Chr1g0369351 RchiOBHm_Chr1g0369371 RchiOBHm_Chr1g0369381
rosa_laevigata	RLG00000027134 RLG00000027135
rosa_multiflora	Rmu_sc0001482.1_g000008 Rmu_sc0003612.1_g000021
rosa_roxburghii	Rroxscaffold_4G00287690 Rroxscaffold_4G00287710
rosa_rugosa	Rorug01G0349700 Rorug01G0349700
rosa_samantha	Rh1AG357000 Rh1AG357300 Rh1BG321000 Rh1BG321300 Rh1CG335000 Rh1CG335200 Rh1DG351700 Rh1DG352000
rosa_wichuraiana	Rw1G031520 Rw1G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	144, 237
AcsI	RAATTY	2 cut(s)	222, 269
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	158, 167
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	42, 88
AluI	AGCT	2 cut(s)	42, 88
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	144, 237
Ama87I	CYCGRG	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	222, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	136, 229
BspACI	CCGC	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	2 cut(s)	144, 237
BssMI	GATC	2 cut(s)	136, 229
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	106, 202
BstC8I	GCNNGC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	139, 232
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	136, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	136, 229
BstYI	RGATCY	2 cut(s)	136, 229
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	102, 198
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	83, 251
CviJI	RGCY	4 cut(s)	42, 79, 88, 176
CviKI_1	RGCY	4 cut(s)	42, 79, 88, 176
CviQI	GTAC	1 cut(s)	107
DpnI	GATC	2 cut(s)	138, 231
DpnII	GATC	2 cut(s)	136, 229
DraI	TTTAAA	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	2 cut(s)	86, 254
FaiI	YATR	5 cut(s)	84, 129, 131, 173, 252
FatI	CATG	2 cut(s)	82, 250
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	86, 254
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	106, 202
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	86, 254
Kzo9I	GATC	2 cut(s)	136, 229
LpnPI	CCDG	3 cut(s)	163, 190, 221
MalI	GATC	2 cut(s)	138, 231
MboI	GATC	2 cut(s)	136, 229
MboII	GAAGA	4 cut(s)	170, 224, 235, 278
MflI	RGATCY	2 cut(s)	136, 229
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	48, 181, 207, 222, 269
MnlI	CCTC	5 cut(s)	12, 28, 52, 199, 272
MseI	TTAA	2 cut(s)	119, 194
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	2 cut(s)	136, 229
NlaIII	CATG	2 cut(s)	86, 254
NlaIV	GGNNCC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	147
PpuMI	RGGWCCY	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	21
PspPPI	RGGWCCY	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	136, 229
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	119, 194
Sau3AI	GATC	2 cut(s)	136, 229
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	26, 44, 90, 165, 283
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	48, 181, 207, 222, 269
SsiI	CCGC	1 cut(s)	247
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	106, 202
TaqI	TCGA	3 cut(s)	44, 111, 288
TasI	AATT	5 cut(s)	48, 181, 207, 222, 269
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	119, 194
Tru9I	TTAA	2 cut(s)	119, 194
TscAI	CASTG	2 cut(s)	109, 205
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	109, 205
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	2 cut(s)	222, 269
XhoI	CTCGAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.