RchiOBHm_Chr1g0376031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
63292469 .. 63293636
1168 bp
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UTR
Exon/CDS
Intron
PRQ59971

Sequence Viewer

Length: 156 bp
ATGAGAAATAGCGGCAGCTGCATTTCGATGGAGTTTCTGGATAGGCAGAGGGCTCGCTTCAACAGTGTTTTGAGAGCTCTCTCTGCAGGAAATTGGGGTTCAAATTTATGCTCGCTCTTCACTTCTCCAAACCCGCCTTCAACTCCGTCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.56

Weight (kDa)

10.3

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 2 cut(s) 12, 134
AcsI RAATTY 1 cut(s) 103
AgsI TTSAA 3 cut(s) 61, 102, 141
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 2 cut(s) 18, 77
AluI AGCT 2 cut(s) 18, 77
Alw21I GWGCWC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 15, 18
ApoI RAATTY 1 cut(s) 103
BanII GRGCYC 2 cut(s) 55, 79
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 5, 27
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 13, 16, 19
BlsI GCNGC 3 cut(s) 14, 17, 20
BseXI GCAGC 2 cut(s) 5, 27
BsiHKAI GWGCWC 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 55, 79
BspACI CCGC 2 cut(s) 12, 134
BspMAI CTGCAG 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 55, 113
BstMWI GCNNNNNNNGC 2 cut(s) 18, 83
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 5, 27
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 55, 113
CviJI RGCY 3 cut(s) 18, 53, 77
CviKI_1 RGCY 3 cut(s) 18, 53, 77
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 55, 79
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoT38I GRGCYC 2 cut(s) 55, 79
FaiI YATR 1 cut(s) 109
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 13, 16, 19
FriOI GRGCYC 2 cut(s) 55, 79
Fsp4HI GCNGC 3 cut(s) 13, 16, 19
GluI GCNGC 3 cut(s) 13, 16, 19
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 21, 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 83
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 23, 72
Lsp1109I GCAGC 2 cut(s) 5, 27
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 55, 79
MluCI AATT 2 cut(s) 91, 103
MnlI CCTC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 18, 83
PciSI GCTCTTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 14, 17, 20
Psp124BI GAGCTC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 3 cut(s) 13, 16, 19
SduI GDGCHC 2 cut(s) 55, 79
SetI ASST 3 cut(s) 20, 79, 155
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 5 cut(s) 50, 66, 99, 124, 145
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 91, 103
SsiI CCGC 2 cut(s) 12, 134
SstI GAGCTC 1 cut(s) 79
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 91, 103
TauI GCSGC 1 cut(s) 15
TscAI CASTG 1 cut(s) 70
TseI GCWGC 2 cut(s) 15, 18
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.