Rroxscaffold_2G00131820

Belongs to the peroxisomal membrane protein PXMP2 4 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
68665795 .. 68670512
4718 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00131820.1

Sequence Viewer

Length: 267 bp
ATGAGTTCTTCTTCTATTTTTCAGGGATGGACCCTTTACGAGATATTGAAGTATGTACCTGAACACAATTGGATTGCCTATGAACAAGCTCTCCAAGCAAACCCTGTTTTAACCAAAATGGTGATAAGCCAGCTCAAGTCAAGTAAGCTCAAAAAGATCAATCTGAAAAAGAAGCTAGAACTGGAGGACAAGCTGTTGGATGTTCCACCCGACACACTAGGCGCTGCTGCCTTGGCACTACACTATGCAACTATGAGAGAACGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.06

Weight (kDa)

9.22

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 262
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 5 cut(s) 89, 133, 148, 175, 193
AluI AGCT 5 cut(s) 89, 133, 148, 175, 193
ApeKI GCWGC 2 cut(s) 224, 227
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 211, 214
BccI CCATC 1 cut(s) 21
BfaI CTAG 2 cut(s) 176, 218
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 2 cut(s) 225, 228
BlsI GCNGC 2 cut(s) 226, 229
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse1I ACTGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 32, 205
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 211, 214
Bsp143I GATC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 32, 205
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 95, 233
BstV1I GCAGC 2 cut(s) 211, 214
BtsCI GGATG 2 cut(s) 32, 205
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 56
CviJI RGCY 6 cut(s) 89, 129, 133, 148, 175, 193
CviKI_1 RGCY 6 cut(s) 89, 129, 133, 148, 175, 193
CviQI GTAC 1 cut(s) 56
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 4 cut(s) 54, 81, 246, 254
Fnu4HI GCNGC 2 cut(s) 225, 228
FokI GGATG 2 cut(s) 39, 212
Fsp4HI GCNGC 2 cut(s) 225, 228
FspBI CTAG 2 cut(s) 176, 218
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 225, 228
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 225
HhaI GCGC 1 cut(s) 224
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 233
HpySE526I ACGT 1 cut(s) 262
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 8, 72, 117, 143, 167
Lsp1109I GCAGC 2 cut(s) 211, 214
MaeI CTAG 2 cut(s) 176, 218
MaeII ACGT 1 cut(s) 262
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 3
MfeI CAATTG 1 cut(s) 67
MluCI AATT 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 110
MunI CAATTG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 95, 233
NdeII GATC 1 cut(s) 156
NlaIV GGNNCC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 226, 229
Psp1406I AACGTT 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 30
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 225, 228
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 30
SetI ASST 7 cut(s) 61, 91, 135, 150, 177, 195, 265
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 176, 218
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 1 cut(s) 265
TasI AATT 1 cut(s) 67
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 2 cut(s) 224, 227
TspDTI ATGAA 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 30
XspI CTAG 2 cut(s) 176, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.