RchiOBHm_Chr6g0245701

Belongs to the peroxisomal membrane protein PXMP2 4 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
1467422 .. 1467711
290 bp
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UTR
Exon/CDS
Intron
PRQ22021

Sequence Viewer

Length: 243 bp
ATGAGGGGTTTGTCTCTGTATGGATGGACCCTTTACGAGATACTGAAGTATGTACCTGAACATAATTGGATTGTCTATGAACAAGCTCTCCAAGCAAACCCTGTTTTAGCCAAAATGGTGATAAGCCAGGTAGTTTATACTCTAGGATCCCTTTCTCATTATTATTACCAATTTTGTGAGGTGATGGTTTTGATTTATATTTGCTTACTTATGGCTTCTTTGGTGGGTTTCTTGAGTGGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.25

Weight (kDa)

6.0

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 141, 154
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 54
AjnI CCWGG 1 cut(s) 126
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 141, 154
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 130, 193
AvaII GGWCC 1 cut(s) 27
BaeI ACNNNNGTAYC 2 cut(s) 32, 65
BamHI GGATCC 1 cut(s) 146
BccI CCATC 2 cut(s) 18, 178
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 29, 148
BmrFI CCNGG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseBI CCWGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 29, 148
BspPI GGATC 2 cut(s) 141, 154
BssMI GATC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BtsCI GGATG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 5 cut(s) 86, 110, 126, 215, 240
CviKI_1 RGCY 5 cut(s) 86, 110, 126, 215, 240
CviQI GTAC 1 cut(s) 53
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 126
FaiI YATR 7 cut(s) 21, 51, 63, 78, 138, 198, 212
FokI GGATG 1 cut(s) 36
FspBI CTAG 1 cut(s) 143
HphI GGTGA 2 cut(s) 130, 193
Hpy188III TCNNGA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 69, 113, 114, 140
MaeI CTAG 1 cut(s) 143
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MflI RGATCY 1 cut(s) 146
MluCI AATT 2 cut(s) 64, 170
MnlI CCTC 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 29, 148
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 29, 148
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 128
SetI ASST 4 cut(s) 58, 88, 132, 183
SgeI CNNG 8 cut(s) 49, 68, 95, 104, 113, 139, 140, 155
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 64, 170
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 126
TasI AATT 2 cut(s) 64, 170
TspDTI ATGAA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 27
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.