Rroxscaffold_2G00144360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
82266918 .. 82271079
4162 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00144360.1

Sequence Viewer

Length: 156 bp
ATGAGCAGTAGCTCCGGCGGTATTTCGATGGTGTTTCGGGATAGGCAGAGGGCTCGCTTCAACAGTGTTTTGAGAGCTCTCTCTGCGAGAAATTGGGGTTTGAATTTGTGCTTGCTCTTCACTTCTCCAAACCCGCCTTCAACTCCGTCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.59

Weight (kDa)

12.0

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 2 cut(s) 18, 134
AcsI RAATTY 1 cut(s) 103
AgsI TTSAA 3 cut(s) 61, 103, 141
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 2 cut(s) 12, 77
AluI AGCT 2 cut(s) 12, 77
Alw21I GWGCWC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 103
BanII GRGCYC 2 cut(s) 55, 79
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 55, 79
BspACI CCGC 2 cut(s) 18, 134
BspQI GCTCTTC 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 55, 113
BstMWI GCNNNNNNNGC 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 55, 113
CviJI RGCY 3 cut(s) 12, 53, 77
CviKI_1 RGCY 3 cut(s) 12, 53, 77
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 55, 79
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoT38I GRGCYC 2 cut(s) 55, 79
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 149
FriOI GRGCYC 2 cut(s) 55, 79
HapII CCGG 1 cut(s) 15
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 1 cut(s) 28
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 55, 79
MluCI AATT 2 cut(s) 91, 103
MnlI CCTC 1 cut(s) 42
MspI CCGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 122
SduI GDGCHC 2 cut(s) 55, 79
SetI ASST 3 cut(s) 14, 79, 155
SgeI CNNG 6 cut(s) 27, 50, 66, 99, 124, 145
Sse9I AATT 2 cut(s) 91, 103
SsiI CCGC 2 cut(s) 18, 134
SstI GAGCTC 1 cut(s) 79
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 91, 103
TscAI CASTG 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.