Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016433

Physical Location & Seq

Genomic Coordinates Reverse (-)

33431791 .. 33446027

Gene Structure 14237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATGTCATCGATTCTCAAGCCGTACAATGGGGTGAGATGGGAAGACGACGGCAATGAGCAAGAAGAATCGCAACAAATTTACTCTCTGATTTCGGTTTATTCCCTTTCAAAATGCGCCGAAGATGAGGACCGGGTCTCAGGTGGAGAAGTTAAGCACAAATCCTCAGATGGTGTTGCCGCAAGTGCCATGCCTGCTCCAAGTCTTGATGGTGGTGCGAAATCTGGAAGGAGCAGCGAAGGTGGTAGAGGAGGGCATAAGAAGTTAGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATCTGGTCGCTGAGATTGTTGCTAACTTCATTGTGAAGGGTTTGGTATTCCAGCAAGGTCGTAGTTCAGGCATATTGTCAGGCAATTACAACTGGAGGATAGATCTGGGTCTCGAACGAGCACGTCATGTTCAAGCCAAAGGACAAACTAAGGCAAAAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ING

Protein Analysis

157

Amino Acids

17.12

Weight (kDa)

6.31

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376031 RchiOBHm_Chr2g0152791 RchiOBHm_Chr3g0452491 RchiOBHm_Chr3g0479151 RchiOBHm_Chr6g0245701
rosa_roxburghii	Rroxscaffold_2G00131820 Rroxscaffold_2G00144360
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh4CG020500 Rh4CG139900 Rh4CG140000 Rh4DG167800 Rh6AG032100 Rh6DG165900
rosa_wichuraiana	Rw5G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	111, 440
AjiI	CACGTC	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	142, 422
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	290, 323
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	3 cut(s)	33, 164, 203
BceAI	ACGGC	2 cut(s)	7, 67
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	142, 422
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	2 cut(s)	180, 235
BlsI	GCNGC	2 cut(s)	181, 236
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	142, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	153, 180, 309
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	142, 422
Bso31I	GGTCTC	2 cut(s)	142, 422
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	152, 179, 310
BspDI	ATCGAT	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	142, 422
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	139, 166, 318, 456
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	142, 422
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 194
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	190, 434
CviJI	RGCY	2 cut(s)	22, 443
CviKI_1	RGCY	2 cut(s)	22, 443
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	139, 166, 318, 456
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
Eco31I	GGTCTC	2 cut(s)	142, 422
Eco47I	GGWCC	1 cut(s)	130
FaeI	CATG	2 cut(s)	193, 437
FaiI	YATR	4 cut(s)	191, 258, 380, 435
FatI	CATG	2 cut(s)	189, 433
Fnu4HI	GCNGC	2 cut(s)	180, 235
Fsp4HI	GCNGC	2 cut(s)	180, 235
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	180, 235
GsuI	CTGGAG	1 cut(s)	421
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	193, 437
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	13, 68, 287
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	90, 169
Hpy188III	TCNNGA	4 cut(s)	206, 225, 284, 419
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	222, 233, 337
HpyCH4IV	ACGT	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 194
HpyF3I	CTNAG	4 cut(s)	139, 166, 318, 456
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	193, 437
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	202, 231
Lsp1109I	GCAGC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	430
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	3 cut(s)	56, 77, 134
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	3 cut(s)	78, 391, 465
MnlI	CCTC	5 cut(s)	121, 175, 242, 245, 396
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	185, 194
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	2 cut(s)	193, 437
PfeI	GAWTC	3 cut(s)	13, 68, 287
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	181, 236
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	180, 235
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	4 cut(s)	145, 244, 367, 433
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	78, 391, 465
SsiI	CCGC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	11, 420
TasI	AATT	3 cut(s)	78, 391, 465
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	13, 68, 287
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.