Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016433

Physical Location & Seq

Genomic Coordinates Reverse (-)

27748773 .. 27764558

Gene Structure 15786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCATCGATTCTCAAGCCGTCCAATGGGGTGAGATGGGAAGACGACGGCAGCTTCTTAATCCGAGAAGAATCGCAACAAATTTACTCTCTGATTTCGGTTTATTCCCTTTCAAAATGCGCCGAAGATGAGGACCGGGTCGCAGAGCTCTGGCCTGCCTCAGATGGTGTTGCTGCAAGTGCCATGCCTGCTCCAAGTCTTGATGGTGGTGCGAAATCTGGAAGGAGCAGCGAAGGTGGTAGAGGAGGGCATAAGAATATAACTGATGCTCAGGACACTGATGAAATAAGGTACATTGATCAGCCAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ING

Protein Analysis

104

Amino Acids

11.21

Weight (kDa)

4.55

Isoelectric Point (pI)

68.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376031 RchiOBHm_Chr2g0152791 RchiOBHm_Chr3g0452491 RchiOBHm_Chr3g0479151 RchiOBHm_Chr6g0245701
rosa_roxburghii	Rroxscaffold_2G00131820 Rroxscaffold_2G00144360
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh4CG020500 Rh4CG139900 Rh4CG140000 Rh4DG167800 Rh6AG032100 Rh6DG165900
rosa_wichuraiana	Rw5G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	2 cut(s)	54, 148
AluI	AGCT	2 cut(s)	54, 148
Alw21I	GWGCWC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	51, 173, 228
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	63, 160, 240
BccI	CCATC	3 cut(s)	30, 158, 197
BceAI	ACGGC	2 cut(s)	4, 64
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	52, 174, 229
BlsI	GCNGC	3 cut(s)	53, 175, 230
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	174, 284
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	63, 160, 240
BshFI	GGCC	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	173, 283
BspDI	ATCGAT	1 cut(s)	8
BssMI	GATC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	156, 189
BstDEI	CTNAG	2 cut(s)	160, 270
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	63, 160, 240
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	154
BsuTUI	ATCGAT	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	156, 189
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	19, 54, 148, 154, 304
CviKI_1	RGCY	5 cut(s)	19, 54, 148, 154, 304
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	160, 270
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	185, 252, 260
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	52, 174, 229
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	52, 174, 229
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	52, 174, 229
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	10, 71
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	65, 93, 163
Hpy188III	TCNNGA	3 cut(s)	200, 219, 272
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	216, 227
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	2 cut(s)	160, 270
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	196, 225
LpnPI	CCDG	6 cut(s)	136, 149, 168, 201, 204, 257
Lsp1109I	GCAGC	3 cut(s)	63, 160, 240
LweI	GCATC	1 cut(s)	256
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	53, 80, 137
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	4 cut(s)	124, 169, 236, 239
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	10, 71
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	53, 175, 230
Psp124BI	GAGCTC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	3 cut(s)	52, 174, 229
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	56, 150, 238, 293
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	10, 71
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	3 cut(s)	51, 173, 228
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.