Rh4CG139900

Belongs to the peroxisomal membrane protein PXMP2 4 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
27730716 .. 27748254
17539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG139900.1

Sequence Viewer

Length: 411 bp
ATGGAAGCAATCATGGGACCTTTGTGGTGCTTGCTTACGATTGACCATGACTATTGGCATGGATGGACCCTTTACGAGATACTGAAGTATGTACCTGAACATAATTGGATTGTCTATGAACAAGCTCTCCAAGCAAACCCTGTTTTAGCCAAAATGGTGATAAGCCAGAAACTAGTAGTAAAATGTAACTGGGATGATGATGATGATGTGGATGAGAATAAGAAACTAGCAGTAAAATATAACTGGGATGATGATGATGATGTGGATGAGAATGATGTGAAGGACTCATGGGAGGATGATGCTGTCCTTGCTCCTCCAAGTGAATTTTGCTGCTACATTGTGTCTGAACCTCTCTTTGTTGCTCTGAGAGACCCATTGTACAAGTCTGATAGGGACGTCTTAAAGGTATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.97

Weight (kDa)

4.18

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 93, 380
AhlI ACTAGT 1 cut(s) 172
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 17, 66
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 2 cut(s) 17, 66
BaeI ACNNNNGTAYC 2 cut(s) 71, 104
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 363
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 2 cut(s) 173, 227
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme18I GGWCC 2 cut(s) 17, 66
BmgT120I GGNCC 2 cut(s) 17, 66
BmiI GGNNCC 2 cut(s) 18, 68
BmrI ACTGGG 2 cut(s) 199, 253
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 2 cut(s) 199, 253
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 2 cut(s) 194, 248
BseGI GGATG 6 cut(s) 68, 199, 217, 253, 271, 301
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 2 cut(s) 194, 248
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 317
BslFI GGGAC 2 cut(s) 30, 407
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 30, 407
Bso31I GGTCTC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 18, 68
BspTNI GGTCTC 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 194, 248
BssNI GRCGYC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 396
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 365
BstF5I GGATG 6 cut(s) 68, 199, 217, 253, 271, 301
BstMAI GTCTC 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 131, 308
BstV1I GCAGC 1 cut(s) 317
BtsCI GGATG 6 cut(s) 68, 199, 217, 253, 271, 301
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 17, 66
Csp6I GTAC 2 cut(s) 92, 379
CviAII CATG 4 cut(s) 13, 47, 59, 288
CviJI RGCY 3 cut(s) 125, 149, 165
CviKI_1 RGCY 3 cut(s) 125, 149, 165
CviQI GTAC 2 cut(s) 92, 379
DdeI CTNAG 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 17, 66
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 17
FaeI CATG 4 cut(s) 16, 50, 62, 291
FaiI YATR 9 cut(s) 14, 48, 60, 90, 102, 117, 240, 289, 409
FaqI GGGAC 2 cut(s) 30, 407
FatI CATG 4 cut(s) 12, 46, 58, 287
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 6 cut(s) 75, 206, 224, 260, 278, 308
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 2 cut(s) 173, 227
GluI GCNGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 4 cut(s) 16, 50, 62, 291
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 346, 366, 388
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 308
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 4 cut(s) 16, 50, 62, 291
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 108, 153, 175, 179, 229
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 173, 227
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 185
MluCI AATT 2 cut(s) 103, 323
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 3 cut(s) 286, 324, 360
MseI TTAA 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 131, 308
NlaIII CATG 4 cut(s) 16, 50, 62, 291
NlaIV GGNNCC 2 cut(s) 18, 68
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 18, 68
PspPI GGNCC 2 cut(s) 17, 66
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 93, 380
RsaNI GTAC 2 cut(s) 92, 379
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 17, 66
SchI GAGTC 1 cut(s) 278
SetI ASST 6 cut(s) 22, 97, 127, 352, 399, 408
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 2 cut(s) 17, 66
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 2 cut(s) 103, 323
SspMI CTAG 2 cut(s) 173, 227
TaiI ACGT 1 cut(s) 399
TasI AATT 2 cut(s) 103, 323
TatI WGTACW 1 cut(s) 378
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 17, 66
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 173, 227
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.