Rw5G016190

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
20279226 .. 20284785
5560 bp
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UTR
Exon/CDS
Intron
Rw5G016190.1

Sequence Viewer

Length: 192 bp
ATGAGTCATTCTGGTACCAGAAGCTATTGCAGGTCGGGTTACCGAGAGGTGAAGAGGCTATCGGGTTCCAAATTTGGTCACCCAGGGGTGATGAAGCTTTTGGTCGCTGAGATTGTTGCTAACTTCATTGTGAAGGGTTTGGTATTCCAGCAAGGTCGTAGTTCAGGCATATTGTCAGGCAATTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.89

Weight (kDa)

10.45

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 24, 97
AluI AGCT 2 cut(s) 24, 97
ApoI RAATTY 1 cut(s) 71
Asp718I GGTACC 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 61, 71, 100
BanI GGYRCC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 16, 67
BmrFI CCNGG 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 82, 83
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 82, 83
BseMII CTCAG 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 16, 67
BspMI ACCTGC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 82, 83
Bst2UI CCWGG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 108
BstEII GGTNACC 2 cut(s) 38, 77
BstNI CCWGG 1 cut(s) 84
BstPI GGTNACC 2 cut(s) 38, 77
BstSCI CCNGG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 3 cut(s) 24, 58, 97
CviKI_1 RGCY 3 cut(s) 24, 58, 97
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco91I GGTNACC 2 cut(s) 38, 77
EcoO65I GGTNACC 2 cut(s) 38, 77
EcoRII CCWGG 1 cut(s) 82
FaiI YATR 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 4
HphI GGTGA 3 cut(s) 61, 71, 100
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 108
KpnI GGTACC 1 cut(s) 18
LpnPI CCDG 7 cut(s) 16, 31, 69, 96, 150, 161, 162
MaeIII GTNAC 2 cut(s) 38, 77
MboII GAAGA 1 cut(s) 64
MluCI AATT 2 cut(s) 71, 181
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 40, 48
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
NlaIV GGNNCC 2 cut(s) 16, 67
NmuCI GTSAC 1 cut(s) 77
PasI CCCWGGG 1 cut(s) 83
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 82
PspEI GGTNACC 2 cut(s) 38, 77
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 16, 67
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 26, 35, 51, 99, 157
Sse9I AATT 2 cut(s) 71, 181
StyD4I CCNGG 1 cut(s) 82
TasI AATT 2 cut(s) 71, 181
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 107, 115
XapI RAATTY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.