Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016433

Physical Location & Seq

Genomic Coordinates Reverse (-)

25405543 .. 25440862

Gene Structure 35320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAATCAAGAGTCACAGACGCAGTCTGCGCAGATCCTGGCATCAGCCCGCTCTGCACAACCCGACTTGCCGAGCCCAGCGCCTCCAGTCCGCCTCACGCCTAGCAGATCATTCGGACTCGATCGCTGCGCCCAGATCATTAGCCCAGATCGGCCCTTCTCTCCAGGGCCTAGCACCTGCAAGTGTCGCTGAGATTGTTGCTAACTTCATTGTGAAGGGTCTGGTATTCCAGCAAGGTCGTAGTTCAGGCATATCGTCAGGCAATTACAAGAACAGTGCTTTCAGCTTTGCTTTATTTGATTTTGGGGCAGCTTTTGGGTTGTTGCATGCAACAAAGATTTCATTGGTCGCAGATGATGGCTTAGATTGCTTGGAATTAGAAGCAACAGACCGGCTAGACCCAGATTGGTCGTTAACAGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

9.18

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376031 RchiOBHm_Chr2g0152791 RchiOBHm_Chr3g0452491 RchiOBHm_Chr3g0479151 RchiOBHm_Chr6g0245701
rosa_roxburghii	Rroxscaffold_2G00131820 Rroxscaffold_2G00144360
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh4CG020500 Rh4CG139900 Rh4CG140000 Rh4DG167800 Rh6AG032100 Rh6DG165900
rosa_wichuraiana	Rw5G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc16I	TGCGCA	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 93
AclWI	GGATC	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	38, 165
AluBI	AGCT	2 cut(s)	288, 314
AluI	AGCT	2 cut(s)	288, 314
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	154, 169
ApeKI	GCWGC	2 cut(s)	128, 311
AspLEI	GCGC	3 cut(s)	33, 84, 133
AspS9I	GGNCC	2 cut(s)	155, 169
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	115, 323
BccI	CCATC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	2 cut(s)	40, 167
BfaI	CTAG	3 cut(s)	104, 173, 398
BfoI	RGCGCY	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	129, 312
BlsI	GCNGC	2 cut(s)	130, 313
Bme1390I	CCNGG	2 cut(s)	40, 167
BmgT120I	GGNCC	2 cut(s)	155, 169
BmrFI	CCNGG	2 cut(s)	40, 167
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	2 cut(s)	71, 149
BsaJI	CCNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	40, 167
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	115, 323
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	156, 171
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	394
BsnI	GGCC	2 cut(s)	156, 171
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	35, 109, 123, 137, 150
BspACI	CCGC	2 cut(s)	51, 93
BspANI	GGCC	2 cut(s)	156, 171
BspCNI	CTCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	5 cut(s)	35, 109, 123, 137, 150
Bst2UI	CCWGG	2 cut(s)	40, 167
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	51, 330
BstDEI	CTNAG	2 cut(s)	192, 364
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	3 cut(s)	33, 84, 133
BstKTI	GATC	5 cut(s)	38, 112, 126, 140, 153
BstMBI	GATC	5 cut(s)	35, 109, 123, 137, 150
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 55, 188, 369
BstNI	CCWGG	2 cut(s)	40, 167
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	38, 165
BstV1I	GCAGC	2 cut(s)	115, 323
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	156, 171
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	51, 330
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	3 cut(s)	33, 84, 133
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	155, 169
CseI	GACGC	1 cut(s)	30
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	9 cut(s)	49, 77, 146, 156, 171, 288, 314, 363, 397
CviKI_1	RGCY	9 cut(s)	49, 77, 146, 156, 171, 288, 314, 363, 397
DdeI	CTNAG	2 cut(s)	192, 364
DpnI	GATC	5 cut(s)	37, 111, 125, 139, 152
DpnII	GATC	5 cut(s)	35, 109, 123, 137, 150
EciI	GGCGGA	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	38, 165
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	1 cut(s)	332
FaiI	YATR	2 cut(s)	254, 330
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	129, 312
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	129, 312
FspBI	CTAG	3 cut(s)	104, 173, 398
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	3 cut(s)	32, 83, 132
GluI	GCNGC	2 cut(s)	129, 312
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	2 cut(s)	71, 149
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	156, 171
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	3 cut(s)	33, 84, 133
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	3 cut(s)	31, 82, 131
HinP1I	GCGC	3 cut(s)	31, 82, 131
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	2 cut(s)	13, 119
HpaI	GTTAAC	1 cut(s)	417
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	168, 211
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	58, 182, 328, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 55, 188, 369
HpyF3I	CTNAG	2 cut(s)	192, 364
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	3 cut(s)	31, 82, 131
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	5 cut(s)	35, 109, 123, 137, 150
Lsp1109I	GCAGC	2 cut(s)	115, 323
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	104, 173, 398
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	5 cut(s)	37, 111, 125, 139, 152
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	5 cut(s)	35, 109, 123, 137, 150
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	265, 377
MlyI	GAGTC	2 cut(s)	22, 113
MnlI	CCTC	2 cut(s)	95, 106
MseI	TTAA	1 cut(s)	416
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	40, 167
MvaI	CCWGG	2 cut(s)	40, 167
MwoI	GCNNNNNNNGC	4 cut(s)	30, 55, 188, 369
NdeII	GATC	5 cut(s)	35, 109, 123, 137, 150
NlaIII	CATG	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	14
NsbI	TGCGCA	1 cut(s)	32
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	187
PflFI	GACNNNGTC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	130, 313
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	21, 113
PpsI	GAGTC	2 cut(s)	21, 113
Psp6I	CCWGG	2 cut(s)	38, 165
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	38, 165
PspPI	GGNCC	2 cut(s)	155, 169
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	24
PvuI	CGATCG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	2 cut(s)	129, 312
Sau3AI	GATC	5 cut(s)	35, 109, 123, 137, 150
Sau96I	GGNCC	2 cut(s)	155, 169
SchI	GAGTC	2 cut(s)	22, 113
ScrFI	CCNGG	2 cut(s)	40, 167
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	181, 241, 290, 316
SfaNI	GCATC	1 cut(s)	52
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	265, 377
SsiI	CCGC	2 cut(s)	51, 93
SspMI	CTAG	3 cut(s)	104, 173, 398
StyD4I	CCNGG	2 cut(s)	38, 165
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	265, 377
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	128, 311
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	17, 199, 333
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	24
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	3 cut(s)	104, 173, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.