RchiOBHm_Chr1g0376661

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
63880779 .. 63882705
1927 bp
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UTR
Exon/CDS
Intron
PRQ60028

Sequence Viewer

Length: 144 bp
ATGAAGCTAGAAATGAAACTAATAATGATTCTGGAAATGAGTATGGTGAACAGGTACCAAGATCAGTTGAATCCCATGAGATATCAACAAATCTGCACCCTTAATTTTCAAGGGCTGCAGGCATATGATAAAAGGGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

47

Amino Acids

5.79

Weight (kDa)

6.16

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 54
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 70, 110
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 102
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 54
BssMI GATC 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 76
CviJI RGCY 2 cut(s) 7, 115
CviKI_1 RGCY 2 cut(s) 7, 115
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 83
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 44, 77, 124, 126
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 79
HinfI GANTC 2 cut(s) 28, 70
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 96, 118
Hsp92II CATG 1 cut(s) 79
KpnI GGTACC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 17, 37, 104
Lsp1109I GCAGC 1 cut(s) 102
MaeI CTAG 1 cut(s) 8
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MluCI AATT 1 cut(s) 103
MseI TTAA 1 cut(s) 102
NdeI CATATG 1 cut(s) 124
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 28, 70
PkrI GCNGC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 120
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 61
SetI ASST 2 cut(s) 9, 56
SfcI CTRYAG 1 cut(s) 116
SgeI CNNG 7 cut(s) 20, 44, 64, 71, 88, 122, 131
Sse9I AATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 8
TasI AATT 1 cut(s) 103
TfiI GAWTC 2 cut(s) 28, 70
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 29
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.