Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Forward (+)

22927379 .. 22927819

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACCGGCACAGCTCCTCATCTGTGGATTCGTTGGTGAAGATTGGGCGGTTCGCCAAGGAGTCAGAAGAGAACAGGAAGTTTCTCGCCAAGTGCGATGGGTTTGTGGCGCTGCTCGTCGAGGCTCTTGGCGGCGGCAAGGCTAGTGACGGAGGTCACAGGAGCAACAACATTCGCATTCTCAAGCAAATCGTCAGGATCATTCATTTTCAGATTGGAGAAATCCAAGAAAATGATGAATTGATGAGATTGATGTTGAAGAAGAGCGGCGCCGGCGGCGGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAGGAAGCCCTGAGTCTCTAATCGCCTCGGCTAGTGTTATGGAGTCCAACTCTGCGCCGTCAAGTCTCTGTCCAAATTTTTGTCGGACTCGAACTCCACGATGTCGAAGATCGAGAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

146

Amino Acids

15.94

Weight (kDa)

9.5

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	7 - 120	2.4e-10	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	6 cut(s)	49, 132, 135, 267, 276, 279
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	336, 386
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	112, 301
ApoI	RAATTY	1 cut(s)	391
AspLEI	GCGC	3 cut(s)	112, 272, 373
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	99, 288
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	336, 386
BfaI	CTAG	2 cut(s)	144, 348
BfoI	RGCGCY	2 cut(s)	113, 273
BisI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
BlsI	GCNGC	6 cut(s)	114, 134, 137, 269, 278, 303
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	57, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse118I	RCCGGY	2 cut(s)	6, 272
BseDI	CCNNGG	2 cut(s)	57, 342
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	99, 288
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	7, 273
BsmAI	GTCTC	2 cut(s)	336, 386
BsmI	GAATGC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	198, 425
BspACI	CCGC	6 cut(s)	49, 132, 135, 267, 276, 279
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	6, 272
BssAI	RCCGGY	2 cut(s)	6, 272
BssECI	CCNNGG	2 cut(s)	57, 342
BssMI	GATC	2 cut(s)	198, 425
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	63, 257
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	327
BstH2I	RGCGCY	2 cut(s)	113, 273
BstHHI	GCGC	3 cut(s)	112, 272, 373
BstKTI	GATC	2 cut(s)	201, 428
BstMAI	GTCTC	2 cut(s)	336, 386
BstMBI	GATC	2 cut(s)	198, 425
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 276, 285
BstPAI	GACNNNNGTC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	99, 288
BtgZI	GCGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	3 cut(s)	112, 272, 373
Cfr10I	RCCGGY	2 cut(s)	6, 272
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	15, 125, 143, 293, 324, 347
CviKI_1	RGCY	6 cut(s)	15, 125, 143, 293, 324, 347
DdeI	CTNAG	1 cut(s)	327
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	2 cut(s)	200, 427
DpnII	GATC	2 cut(s)	198, 425
Eam1104I	CTCTTC	2 cut(s)	63, 257
EarI	CTCTTC	2 cut(s)	63, 257
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	57
FaiI	YATR	1 cut(s)	356
Fnu4HI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
Fsp4HI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
FspBI	CTAG	2 cut(s)	144, 348
GlaI	GCGC	3 cut(s)	111, 271, 372
GluI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
HaeII	RGCGCY	2 cut(s)	113, 273
HapII	CCGG	2 cut(s)	7, 273
HhaI	GCGC	3 cut(s)	112, 272, 373
Hin1I	GRCGYC	1 cut(s)	270
Hin6I	GCGC	3 cut(s)	110, 270, 371
HinP1I	GCGC	3 cut(s)	110, 270, 371
HinfI	GANTC	5 cut(s)	29, 62, 329, 359, 403
HpaII	CCGG	2 cut(s)	7, 273
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	67, 213, 402, 440
Hpy188III	TCNNGA	2 cut(s)	196, 429
Hpy99I	CGWCG	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 276, 285
HpyF3I	CTNAG	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	270
HspAI	GCGC	3 cut(s)	110, 270, 371
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	198, 425
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	20, 162
LpnPI	CCDG	6 cut(s)	20, 61, 145, 181, 286, 339
Lsp1109I	GCAGC	2 cut(s)	99, 288
MaeI	CTAG	2 cut(s)	144, 348
MaeIII	GTNAC	2 cut(s)	146, 155
MalI	GATC	2 cut(s)	200, 427
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	198, 425
MboII	GAAGA	5 cut(s)	52, 80, 271, 274, 435
MluCI	AATT	2 cut(s)	239, 391
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	4 cut(s)	71, 338, 368, 397
MmeI	TCCRAC	3 cut(s)	337, 380, 387
MnlI	CCTC	4 cut(s)	28, 115, 146, 352
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	2 cut(s)	7, 273
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	273, 276, 285
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	270
NdeII	GATC	2 cut(s)	198, 425
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	146, 155
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 412
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	114, 134, 137, 269, 278, 303
PleI	GAGTC	4 cut(s)	70, 337, 367, 397
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	4 cut(s)	70, 337, 367, 397
PshAI	GACNNNNGTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
Sau3AI	GATC	2 cut(s)	198, 425
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	71, 338, 368, 397
SetI	ASST	2 cut(s)	17, 157
SfoI	GGCGCC	1 cut(s)	271
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	239, 391
SsiI	CCGC	6 cut(s)	49, 132, 135, 267, 276, 279
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	144, 348
StyI	CCWWGG	1 cut(s)	57
TaqI	TCGA	4 cut(s)	120, 406, 421, 428
TasI	AATT	2 cut(s)	239, 391
TauI	GCSGC	4 cut(s)	135, 138, 270, 279
TfiI	GAWTC	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	146, 155
TseI	GCWGC	2 cut(s)	112, 301
Tsp45I	GTSAC	2 cut(s)	146, 155
TspDTI	ATGAA	2 cut(s)	194, 252
TspGWI	ACGGA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	391
XspI	CTAG	2 cut(s)	144, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.