Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Forward (+)

31140865 .. 31141458

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACCTGCACAGCTCCTCATCTATGGATTCGTTGGCGAAGATTGCGCAGTTTGCCAAGGAGTCGGACGAGAACATGAAGTTTCTCGCCAAGTACGACAGGTTTATGGCGCTACTCATCGAGGCTCTTGGCGGCGGCAAGGCCAGCGATGGAGGTCACGGGAGCAACAACATTCGCATTCTCAAGCAAATCGTCAGGATCATTCATTTTCTGATTGGAGAAATCCAAGAGAATGATGAATTGATGAGATTGATGTTGAAGAAGAGCGGTGTCGGCGCCGGCGGCGGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAAGGAAGCCCCGAGAAGGGCGGGCAAAGATTTGCGAGGCTGAGGAAGAGGAAGGAGGTGACTGCTGTGTCTCGGGGATCGACACGAAATGGGCCAGGCGAATCCATGGCGGCGTCGATGGGGCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

151

Amino Acids

16.26

Weight (kDa)

5.83

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
Acc16I	TGCGCA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	8 cut(s)	132, 135, 267, 282, 285, 343, 432, 446
AclWI	GGATC	2 cut(s)	206, 407
AcyI	GRCGYC	2 cut(s)	276, 435
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	338, 339
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	206, 407
Ama87I	CYCGRG	2 cut(s)	333, 394
AoxI	GGCC	2 cut(s)	141, 414
ApeKI	GCWGC	1 cut(s)	307
AspLEI	GCGC	3 cut(s)	49, 112, 278
AspS9I	GGNCC	2 cut(s)	4, 414
AsuHPI	GGTGA	1 cut(s)	392
AvaI	CYCGRG	2 cut(s)	333, 394
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	143, 434
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	451
BfoI	RGCGCY	2 cut(s)	113, 279
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	133, 136, 283, 308, 433
BlsI	GCNGC	5 cut(s)	134, 137, 284, 309, 434
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	333, 394
BmgT120I	GGNCC	2 cut(s)	4, 414
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	276, 435
BsaJI	CCNNGG	2 cut(s)	57, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 339
Bse118I	RCCGGY	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	57, 427
BseLI	CCNNNNNNNGG	2 cut(s)	338, 339
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	2 cut(s)	143, 416
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	2 cut(s)	333, 394
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	338, 339
BsmAI	GTCTC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	143, 416
BsoBI	CYCGRG	2 cut(s)	333, 394
Bsp143I	GATC	2 cut(s)	198, 399
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	8 cut(s)	132, 135, 267, 282, 285, 343, 432, 446
BspANI	GGCC	2 cut(s)	143, 416
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	206, 407
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	57, 427
BssMI	GATC	2 cut(s)	198, 399
BssNI	GRCGYC	2 cut(s)	276, 435
BssT1I	CCWWGG	2 cut(s)	57, 427
Bst2UI	CCWGG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	257, 363
BstACI	GRCGYC	2 cut(s)	276, 435
BstC8I	GCNNGC	3 cut(s)	145, 280, 345
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	427
BstH2I	RGCGCY	2 cut(s)	113, 279
BstHHI	GCGC	3 cut(s)	49, 112, 278
BstKTI	GATC	2 cut(s)	201, 402
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	198, 399
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 53, 144, 273, 282, 291
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	143, 416
BtgI	CCRYGG	1 cut(s)	427
BtgZI	GCGATG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	145, 280, 345
CfoI	GCGC	3 cut(s)	49, 112, 278
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	4, 414
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	76, 428
CviJI	RGCY	7 cut(s)	15, 125, 143, 299, 331, 362, 416
CviKI_1	RGCY	7 cut(s)	15, 125, 143, 299, 331, 362, 416
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	2 cut(s)	200, 401
DpnII	GATC	2 cut(s)	198, 399
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	257, 363
EarI	CTCTTC	2 cut(s)	257, 363
EciI	GGCGGA	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	57, 427
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	333, 394
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	57, 427
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	57, 427
FaeI	CATG	2 cut(s)	79, 431
FaiI	YATR	4 cut(s)	26, 77, 107, 429
FatI	CATG	2 cut(s)	75, 427
FauI	CCCGC	1 cut(s)	336
Fnu4HI	GCNGC	5 cut(s)	133, 136, 283, 308, 433
Fsp4HI	GCNGC	5 cut(s)	133, 136, 283, 308, 433
FspBI	CTAG	1 cut(s)	451
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	3 cut(s)	48, 111, 277
GluI	GCNGC	5 cut(s)	133, 136, 283, 308, 433
HaeII	RGCGCY	2 cut(s)	113, 279
HaeIII	GGCC	2 cut(s)	143, 416
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	49, 112, 278
Hin1I	GRCGYC	2 cut(s)	276, 435
Hin1II	CATG	2 cut(s)	79, 431
Hin6I	GCGC	3 cut(s)	47, 110, 276
HinP1I	GCGC	3 cut(s)	47, 110, 276
HinfI	GANTC	3 cut(s)	29, 62, 423
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	67, 213
Hpy188III	TCNNGA	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	332, 368
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 53, 144, 273, 282, 291
HpyF3I	CTNAG	1 cut(s)	363
Hsp92I	GRCGYC	2 cut(s)	276, 435
Hsp92II	CATG	2 cut(s)	79, 431
HspAI	GCGC	3 cut(s)	47, 110, 276
KasI	GGCGCC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	198, 399
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	20, 162
LpnPI	CCDG	7 cut(s)	20, 85, 157, 181, 292, 403, 430
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	155, 380
MalI	GATC	2 cut(s)	200, 401
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	198, 399
MboII	GAAGA	4 cut(s)	52, 271, 274, 380
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	45, 343
MnlI	CCTC	7 cut(s)	28, 115, 146, 352, 358, 364, 371
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	278
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	6 cut(s)	44, 53, 144, 273, 282, 291
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	198, 399
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	79, 431
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	155, 380
NsbI	TGCGCA	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	29, 423
PkrI	GCNGC	5 cut(s)	134, 137, 284, 309, 434
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	4, 414
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	5 cut(s)	133, 136, 283, 308, 433
Sau3AI	GATC	2 cut(s)	198, 399
Sau96I	GGNCC	2 cut(s)	4, 414
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	418
SetI	ASST	5 cut(s)	9, 17, 104, 157, 382
SfoI	GGCGCC	1 cut(s)	277
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	8 cut(s)	132, 135, 267, 282, 285, 343, 432, 446
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	57, 427
TaqI	TCGA	3 cut(s)	120, 402, 438
TasI	AATT	1 cut(s)	239
TauI	GCSGC	4 cut(s)	135, 138, 285, 435
TfiI	GAWTC	2 cut(s)	29, 423
TseFI	GTSAC	2 cut(s)	155, 380
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	155, 380
TspDTI	ATGAA	3 cut(s)	92, 194, 252
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.