Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025594.1

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 542

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

tggattcgctggccaagattgtgcggttcgccaaggagtcggaagacaacaggaagttcctcgccaactgcgacggctttgcggcgctgctcgtggaggctctcgccggcggcggcggctgcaatgccgccgacgggagcaacaacattcgcattctcgagcaaatcgtcaggatcattcattttctgattggagaaatccaggactctgacgaattggtgaggttgatgctgaagaagagcggcgccggcggtggagattgcttggcttctctgctgcttgttctccagcagggaagcgccgagtctcgaatcgcctcggctagggttatggagtcgatcgccgtgagcgccgagtccaagctcttggtcgccgagcgggacggagtgttgccggaattgttgaaattaacgagtccggaaaaagattccaccctaatcgaagccggactgtcgtgcctgatcgccgtttcggtgccgaaacgcgtgaaggtgaaactagtccaactcggcgccgtcaagtctctgtccaaattgttgtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

180

Amino Acids

18.97

Weight (kDa)

6.81

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	244, 474, 511
AccBSI	CCGCTC	2 cut(s)	242, 378
AccII	CGCG	1 cut(s)	485
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	9 cut(s)	24, 82, 110, 113, 116, 128, 242, 251, 378
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	2 cut(s)	245, 512
AfiI	CCNNNNNNNGG	2 cut(s)	134, 323
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	1 cut(s)	405
AhlI	ACTAGT	1 cut(s)	498
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	311, 527
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	87, 119, 276
AspLEI	GCGC	5 cut(s)	87, 247, 301, 352, 514
AsuHPI	GGTGA	2 cut(s)	231, 504
AvaI	CYCGRG	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	13
BanI	GGYRCC	3 cut(s)	244, 474, 511
BauI	CACGAG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	3 cut(s)	74, 106, 263
BceAI	ACGGC	4 cut(s)	90, 328, 451, 499
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	311, 527
BcuI	ACTAGT	1 cut(s)	498
BfaI	CTAG	2 cut(s)	323, 499
BfoI	RGCGCY	5 cut(s)	88, 248, 302, 353, 515
BisI	GCNGC	9 cut(s)	83, 88, 111, 114, 117, 120, 128, 243, 277
BlsI	GCNGC	9 cut(s)	84, 89, 112, 115, 118, 121, 129, 244, 278
Bme1390I	CCNGG	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	246, 476, 513
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	245, 512
BsaJI	CCNNGG	2 cut(s)	32, 317
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 323
Bse118I	RCCGGY	2 cut(s)	106, 247
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	32, 317
BseLI	CCNNNNNNNGG	2 cut(s)	134, 323
BseMI	GCAATG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	74, 106, 263
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	3 cut(s)	244, 474, 511
BsiEI	CGRYCG	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	5 cut(s)	107, 248, 394, 418, 446
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	134, 323
BsmAI	GTCTC	2 cut(s)	311, 527
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	173, 338, 461
BspACI	CCGC	9 cut(s)	24, 82, 110, 113, 116, 128, 242, 251, 378
BspANI	GGCC	1 cut(s)	13
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	3 cut(s)	246, 476, 513
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	232
BspT107I	GGYRCC	3 cut(s)	244, 474, 511
BsrBI	CCGCTC	2 cut(s)	242, 378
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	106, 247
BssAI	RCCGGY	2 cut(s)	106, 247
BssECI	CCNNGG	2 cut(s)	32, 317
BssMI	GATC	3 cut(s)	173, 338, 461
BssNI	GRCGYC	2 cut(s)	245, 512
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	2 cut(s)	245, 512
BstC8I	GCNNGC	3 cut(s)	11, 108, 249
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	485
BstH2I	RGCGCY	5 cut(s)	88, 248, 302, 353, 515
BstHHI	GCGC	5 cut(s)	87, 247, 301, 352, 514
BstKTI	GATC	3 cut(s)	176, 341, 464
BstMAI	GTCTC	2 cut(s)	311, 527
BstMBI	GATC	3 cut(s)	173, 338, 461
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 119, 248, 349
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	3 cut(s)	74, 106, 263
BstV2I	GAAGAC	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	11, 108, 249
CfoI	GCGC	5 cut(s)	87, 247, 301, 352, 514
Cfr10I	RCCGGY	2 cut(s)	106, 247
CviJI	RGCY	8 cut(s)	13, 77, 100, 119, 268, 322, 363, 445
CviKI_1	RGCY	8 cut(s)	13, 77, 100, 119, 268, 322, 363, 445
DinI	GGCGCC	2 cut(s)	246, 513
DpnI	GATC	3 cut(s)	175, 340, 463
DpnII	GATC	3 cut(s)	173, 338, 461
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	32
EgeI	GGCGCC	2 cut(s)	246, 513
EheI	GGCGCC	2 cut(s)	246, 513
ErhI	CCWWGG	1 cut(s)	32
FaiI	YATR	1 cut(s)	331
FaqI	GGGAC	1 cut(s)	394
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	9 cut(s)	83, 88, 111, 114, 117, 120, 128, 243, 277
Fsp4HI	GCNGC	9 cut(s)	83, 88, 111, 114, 117, 120, 128, 243, 277
FspBI	CTAG	2 cut(s)	323, 499
GlaI	GCGC	5 cut(s)	86, 246, 300, 351, 513
GluI	GCNGC	9 cut(s)	83, 88, 111, 114, 117, 120, 128, 243, 277
GsuI	CTGGAG	1 cut(s)	271
HaeII	RGCGCY	5 cut(s)	88, 248, 302, 353, 515
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	5 cut(s)	107, 248, 394, 418, 446
HhaI	GCGC	5 cut(s)	87, 247, 301, 352, 514
Hin1I	GRCGYC	2 cut(s)	245, 512
Hin6I	GCGC	5 cut(s)	85, 245, 299, 350, 512
HinP1I	GCGC	5 cut(s)	85, 245, 299, 350, 512
HinfI	GANTC	9 cut(s)	4, 37, 205, 304, 311, 334, 355, 414, 427
HpaII	CCGG	5 cut(s)	107, 248, 394, 418, 446
HphI	GGTGA	2 cut(s)	231, 504
Hpy188I	TCNGA	3 cut(s)	42, 188, 210
Hpy188III	TCNNGA	4 cut(s)	157, 171, 308, 418
Hpy99I	CGWCG	2 cut(s)	76, 136
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 119, 248, 349
Hsp92I	GRCGYC	2 cut(s)	245, 512
HspAI	GCGC	5 cut(s)	85, 245, 299, 350, 512
KasI	GGCGCC	2 cut(s)	244, 511
Kpn2I	TCCGGA	1 cut(s)	417
KroI	GCCGGC	2 cut(s)	106, 247
KroNI	GCCGGC	2 cut(s)	108, 249
Kzo9I	GATC	3 cut(s)	173, 338, 461
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	3 cut(s)	74, 106, 263
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	2 cut(s)	323, 499
MalI	GATC	3 cut(s)	175, 340, 463
MbiI	CCGCTC	2 cut(s)	242, 378
MboI	GATC	3 cut(s)	173, 338, 461
MboII	GAAGA	3 cut(s)	55, 246, 249
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	4 cut(s)	214, 397, 406, 532
MluI	ACGCGT	1 cut(s)	483
MluNI	TGGCCA	1 cut(s)	13
Mly113I	GGCGCC	2 cut(s)	245, 512
MlyI	GAGTC	6 cut(s)	46, 199, 313, 343, 364, 423
MmeI	TCCRAC	2 cut(s)	20, 528
MnlI	CCTC	4 cut(s)	70, 90, 215, 327
Mox20I	TGGCCA	1 cut(s)	13
MreI	CGCCGGCG	2 cut(s)	106, 247
MroI	TCCGGA	1 cut(s)	417
MroNI	GCCGGC	2 cut(s)	106, 247
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	409
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	5 cut(s)	107, 248, 394, 418, 446
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	4 cut(s)	116, 119, 248, 349
NaeI	GCCGGC	2 cut(s)	108, 249
NarI	GGCGCC	2 cut(s)	245, 512
NdeII	GATC	3 cut(s)	173, 338, 461
NgoMIV	GCCGGC	2 cut(s)	106, 247
NlaIV	GGNNCC	3 cut(s)	246, 476, 513
NmeAIII	GCCGAG	5 cut(s)	298, 327, 378, 399, 488
PaeR7I	CTCGAG	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 164
PctI	GAATGC	1 cut(s)	152
PdiI	GCCGGC	2 cut(s)	108, 249
PfeI	GAWTC	3 cut(s)	4, 311, 427
PfoI	TCCNGGA	1 cut(s)	200
PkrI	GCNGC	9 cut(s)	84, 89, 112, 115, 118, 121, 129, 244, 278
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	6 cut(s)	45, 199, 312, 342, 363, 422
PluTI	GGCGCC	2 cut(s)	248, 515
PpsI	GAGTC	6 cut(s)	45, 199, 312, 342, 363, 422
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	3 cut(s)	246, 476, 513
PvuI	CGATCG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	9 cut(s)	83, 88, 111, 114, 117, 120, 128, 243, 277
Sau3AI	GATC	3 cut(s)	173, 338, 461
SchI	GAGTC	6 cut(s)	46, 199, 313, 343, 364, 423
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	3 cut(s)	226, 365, 494
SfaNI	GCATC	1 cut(s)	218
SfoI	GGCGCC	2 cut(s)	246, 513
Sfr274I	CTCGAG	1 cut(s)	157
SgrAI	CRCCGGYG	2 cut(s)	106, 247
SlaI	CTCGAG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SpeI	ACTAGT	1 cut(s)	498
Sse9I	AATT	4 cut(s)	214, 397, 406, 532
SsiI	CCGC	9 cut(s)	24, 82, 110, 113, 116, 128, 242, 251, 378
SspDI	GGCGCC	2 cut(s)	244, 511
SspMI	CTAG	2 cut(s)	323, 499
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	4 cut(s)	158, 309, 337, 440
TasI	AATT	4 cut(s)	214, 397, 406, 532
TauI	GCSGC	6 cut(s)	85, 113, 116, 119, 130, 245
TfiI	GAWTC	3 cut(s)	4, 311, 427
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	3 cut(s)	87, 119, 276
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	398
XagI	CCTNNNNNAGG	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	157
XspI	CTAG	2 cut(s)	323, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.