Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Forward (+)

6344052 .. 6346485

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTAGGTACCAAGATCAGTTGAATCCCATGAGTTATCAACCAATCTGCAGCCTTAAATTTTCAAGGTCAGTGGTGGAGTTGATTCAGCAGATAGACCGGCACAGCTCCTCATCCGTGGATTCACCGGCGAAGATTGCGTGGTTCGCCAAGGAGTCGGAAGAGAACAGAAGTTTCTCGCCAAGTGCGACGAGTTTGTGGCGCTACTCGTCGAGGCTCTCGACGGCCGCAAGGCCAGCAACGGAGGTCACGGGAGCAACAAAACATTCGCATTCTCAAGCAAATTGTCGGGATCATTCATTTTACTCGATTGGAGAAATCCAAGAGAACGATGAATTGATGAGATTGATGTTGAAGAAGAGCAGCGCCGGTGCCGACGGCGGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAGGAAGCCCCGAGTCTCGAATCACCTCGGCTAGGGTTATGGAGTCCAACTCGCGCCGTCAAGTCCGTCCAAATTTTTGTCGGACTCGAACTCCACGACGTCGACGATCGAGAAAGTTCGAAGCTGCTCGAAACGGTGTCGTCGGTGAAGGAAGGGCGGCAAAGATTTGCGAGGAAGAGGAGGAGGAAGGAGGTGCCTCTCGTGTCTCGGGGATCGGCACGAAATGGGCCGGGCGAATCCATGGCGGCATCGATGGGGCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

227

Amino Acids

25.1

Weight (kDa)

9.37

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	520
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	3 cut(s)	9, 371, 611
AccI	GTMKAC	1 cut(s)	520
AccII	CGCG	1 cut(s)	472
AciI	CCGC	5 cut(s)	228, 381, 575, 663, 677
AclWI	GGATC	2 cut(s)	300, 638
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	59, 490
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	25, 66, 355
AluBI	AGCT	2 cut(s)	108, 542
AluI	AGCT	2 cut(s)	108, 542
Alw26I	GTCTC	2 cut(s)	438, 628
AlwI	GGATC	2 cut(s)	300, 638
Ama87I	CYCGRG	2 cut(s)	428, 625
AoxI	GGCC	3 cut(s)	225, 233, 645
ApeKI	GCWGC	4 cut(s)	51, 363, 403, 542
ApoI	RAATTY	2 cut(s)	59, 490
Asp718I	GGTACC	1 cut(s)	9
AspLEI	GCGC	3 cut(s)	204, 368, 474
AspS9I	GGNCC	1 cut(s)	645
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	3 cut(s)	117, 433, 575
AsuII	TTCGAA	1 cut(s)	537
AvaI	CYCGRG	2 cut(s)	428, 625
BanI	GGYRCC	3 cut(s)	9, 371, 611
BauI	CACGAG	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	63, 375, 390, 529
BccI	CCATC	1 cut(s)	665
BceAI	ACGGC	3 cut(s)	240, 394, 459
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	438, 628
BfaI	CTAG	2 cut(s)	450, 682
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	205, 369
BisI	GCNGC	7 cut(s)	52, 228, 364, 404, 543, 576, 664
BlsI	GCNGC	7 cut(s)	53, 229, 365, 405, 544, 577, 665
Bme1390I	CCNGG	1 cut(s)	649
BmeT110I	CYCGRG	2 cut(s)	428, 625
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	3 cut(s)	11, 373, 613
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	1 cut(s)	675
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	649
Bsa29I	ATCGAT	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	4 cut(s)	117, 150, 444, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse118I	RCCGGY	3 cut(s)	99, 127, 368
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	4 cut(s)	117, 150, 444, 658
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseRI	GAGGAG	3 cut(s)	100, 611, 614
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	4 cut(s)	63, 375, 390, 529
Bsh1236I	CGCG	1 cut(s)	472
Bsh1285I	CGRYCG	2 cut(s)	228, 527
BshFI	GGCC	3 cut(s)	227, 235, 647
BshNI	GGYRCC	3 cut(s)	9, 371, 611
BshVI	ATCGAT	1 cut(s)	669
BsiEI	CGRYCG	2 cut(s)	228, 527
BsiHKCI	CYCGRG	2 cut(s)	428, 625
BsiSI	CCGG	4 cut(s)	100, 128, 369, 648
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	2 cut(s)	438, 628
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	227, 235, 647
BsoBI	CYCGRG	2 cut(s)	428, 625
Bsp119I	TTCGAA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	16, 292, 524, 630
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	5 cut(s)	228, 381, 575, 663, 677
BspANI	GGCC	3 cut(s)	227, 235, 647
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	11, 373, 613
BspMAI	CTGCAG	1 cut(s)	53
BspPI	GGATC	2 cut(s)	300, 638
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	3 cut(s)	9, 371, 611
BsrFI	RCCGGY	3 cut(s)	99, 127, 368
BssAI	RCCGGY	3 cut(s)	99, 127, 368
BssECI	CCNNGG	4 cut(s)	117, 150, 444, 658
BssMI	GATC	4 cut(s)	16, 292, 524, 630
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	2 cut(s)	150, 658
Bst2BI	CACGAG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	3 cut(s)	156, 353, 588
BstACI	GRCGYC	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	237
BstDSI	CCRYGG	2 cut(s)	117, 658
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	472
BstH2I	RGCGCY	2 cut(s)	205, 369
BstHHI	GCGC	3 cut(s)	204, 368, 474
BstKTI	GATC	4 cut(s)	19, 295, 527, 633
BstMAI	GTCTC	2 cut(s)	438, 628
BstMBI	GATC	4 cut(s)	16, 292, 524, 630
BstMCI	CGRYCG	2 cut(s)	228, 527
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 236, 387
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	63, 375, 390, 529
BstZI	CGGCCG	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	227, 235, 647
BsuTUI	ATCGAT	1 cut(s)	669
BtgI	CCRYGG	2 cut(s)	117, 658
BtsCI	GGATG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	3 cut(s)	204, 368, 474
Cfr10I	RCCGGY	3 cut(s)	99, 127, 368
Cfr13I	GGNCC	1 cut(s)	645
ClaI	ATCGAT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	2 cut(s)	31, 659
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	4 cut(s)	18, 294, 526, 632
DpnII	GATC	4 cut(s)	16, 292, 524, 630
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	156, 353, 588
EarI	CTCTTC	3 cut(s)	156, 353, 588
EciI	GGCGGA	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	150, 658
Eco52I	CGGCCG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	428, 625
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	150, 658
ErhI	CCWWGG	2 cut(s)	150, 658
FaeI	CATG	2 cut(s)	34, 662
FaiI	YATR	3 cut(s)	32, 458, 660
FatI	CATG	2 cut(s)	30, 658
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	7 cut(s)	52, 228, 364, 404, 543, 576, 664
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	7 cut(s)	52, 228, 364, 404, 543, 576, 664
FspBI	CTAG	2 cut(s)	450, 682
GlaI	GCGC	3 cut(s)	203, 367, 473
GluI	GCNGC	7 cut(s)	52, 228, 364, 404, 543, 576, 664
HaeII	RGCGCY	2 cut(s)	205, 369
HaeIII	GGCC	3 cut(s)	227, 235, 647
HapII	CCGG	4 cut(s)	100, 128, 369, 648
HhaI	GCGC	3 cut(s)	204, 368, 474
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	34, 662
Hin6I	GCGC	3 cut(s)	202, 366, 472
HinP1I	GCGC	3 cut(s)	202, 366, 472
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	9 cut(s)	25, 85, 122, 155, 431, 438, 461, 502, 654
HpaII	CCGG	4 cut(s)	100, 128, 369, 648
HphI	GGTGA	3 cut(s)	117, 433, 575
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	2 cut(s)	160, 501
Hpy188III	TCNNGA	4 cut(s)	220, 290, 435, 528
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	8 cut(s)	193, 214, 226, 380, 519, 522, 525, 563
HpyAV	CCTTC	3 cut(s)	560, 564, 599
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 236, 387
HpySE526I	ACGT	1 cut(s)	517
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	34, 662
HspAI	GCGC	3 cut(s)	202, 366, 472
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	16, 292, 524, 630
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	113, 254
LpnPI	CCDG	5 cut(s)	113, 141, 249, 382, 661
Lsp1109I	GCAGC	4 cut(s)	63, 375, 390, 529
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	2 cut(s)	450, 682
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	4 cut(s)	18, 294, 526, 632
MboI	GATC	4 cut(s)	16, 292, 524, 630
MboII	GAAGA	5 cut(s)	145, 173, 367, 370, 605
MluCI	AATT	4 cut(s)	59, 283, 335, 490
MlyI	GAGTC	4 cut(s)	164, 440, 470, 496
MmeI	TCCRAC	4 cut(s)	138, 439, 479, 489
MseI	TTAA	1 cut(s)	57
MspI	CCGG	4 cut(s)	100, 128, 369, 648
MspR9I	CCNGG	1 cut(s)	649
Mva1269I	GAATGC	1 cut(s)	271
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 236, 387
NciI	CCSGG	1 cut(s)	649
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	4 cut(s)	16, 292, 524, 630
NlaIII	CATG	2 cut(s)	34, 662
NlaIV	GGNNCC	3 cut(s)	11, 373, 613
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	4 cut(s)	185, 218, 511, 520
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	5 cut(s)	25, 85, 122, 438, 654
PkrI	GCNGC	7 cut(s)	53, 229, 365, 405, 544, 577, 665
Ple19I	CGATCG	1 cut(s)	527
PleI	GAGTC	4 cut(s)	163, 439, 469, 496
PpsI	GAGTC	4 cut(s)	163, 439, 469, 496
PspN4I	GGNNCC	3 cut(s)	11, 373, 613
PspPI	GGNCC	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	7 cut(s)	52, 228, 364, 404, 543, 576, 664
Sau3AI	GATC	4 cut(s)	16, 292, 524, 630
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	4 cut(s)	164, 440, 470, 496
ScrFI	CCNGG	1 cut(s)	649
SetI	ASST	8 cut(s)	11, 71, 110, 249, 446, 520, 544, 613
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	537
SgrAI	CRCCGGYG	2 cut(s)	127, 368
SgrDI	CGTCGACG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	59, 283, 335, 490
SsiI	CCGC	5 cut(s)	228, 381, 575, 663, 677
SspMI	CTAG	2 cut(s)	450, 682
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	2 cut(s)	150, 658
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	520
TasI	AATT	4 cut(s)	59, 283, 335, 490
TauI	GCSGC	3 cut(s)	230, 578, 666
TfiI	GAWTC	5 cut(s)	25, 85, 122, 438, 654
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	51, 363, 403, 542
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	288, 348
TspGWI	ACGGA	3 cut(s)	106, 257, 473
TspRI	CASTG	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	448
XapI	RAATTY	2 cut(s)	59, 490
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	2 cut(s)	450, 682
ZraI	GACGTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.