Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Reverse (-)

28657528 .. 28657854

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCCTTATCATTCATCGCACCCTCCACCGATCTGGGGACTTCGTGCCCAACCGCACTCTCCACCACCTCATACAGATCTGGTCTGAATCGGTCCGTCTCCAAAAGAAGCGATTCAAAATCGATAACACCAGCCACTCGAAAGACCAGGTGGTGGAGCTGATTCAACAGATGGACCACCACAGCTCCTCCTCTGTGGATTCGTTGGTGAAGATTGCGCGGTTCGCCAAGGAGTTGGAAGAGAACATGAAGTTTCTCGCCAAGTGCGAAGGGTTTGTTACGCTGCTCGTGGTGGCTCTCGGCAGCGGCGGCAATGCTGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

108

Amino Acids

12.27

Weight (kDa)

8.89

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	1 cut(s)	220
AciI	CCGC	4 cut(s)	55, 220, 306, 309
AfiI	CCNNNNNNNGG	2 cut(s)	37, 154
AgsI	TTSAA	2 cut(s)	118, 167
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	160, 186
AluI	AGCT	2 cut(s)	160, 186
Alw26I	GTCTC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	283, 303
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	94, 175
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	94, 175
BaeGI	GKGCMC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	270, 315
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	4 cut(s)	284, 304, 307, 310
BlsI	GCNGC	4 cut(s)	285, 305, 308, 311
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	94, 175
BmgT120I	GGNCC	2 cut(s)	94, 175
BmrFI	CCNGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 173, 200, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 154
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	37, 154
BseMI	GCAATG	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	178, 181
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	270, 315
Bsh1236I	CGCG	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	37, 154
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	32, 78
BspACI	CCGC	4 cut(s)	55, 220, 306, 309
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	32, 78
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	35, 81
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	32, 78
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 309, 318
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	270, 315
BstX2I	RGATCY	1 cut(s)	78
BstXI	CCANNNNNNTGG	2 cut(s)	35, 235
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	94, 175
ClaI	ATCGAT	1 cut(s)	123
CpoI	CGGWCCG	1 cut(s)	94
CsiI	ACCWGGT	1 cut(s)	147
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	4 cut(s)	135, 160, 186, 296
CviKI_1	RGCY	4 cut(s)	135, 160, 186, 296
DpnI	GATC	2 cut(s)	34, 80
DpnII	GATC	2 cut(s)	32, 78
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	94, 175
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	74, 248
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	284, 304, 307, 310
Fsp4HI	GCNGC	4 cut(s)	284, 304, 307, 310
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	284, 304, 307, 310
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	4 cut(s)	89, 114, 163, 200
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 309, 318
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	32, 78
LmnI	GCTCC	2 cut(s)	157, 191
LpnPI	CCDG	6 cut(s)	21, 67, 134, 145, 161, 303
Lsp1109I	GCAGC	2 cut(s)	270, 315
MabI	ACCWGGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	34, 80
MboI	GATC	2 cut(s)	32, 78
MboII	GAAGA	2 cut(s)	223, 251
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	35, 80, 199, 202
MroXI	GAANNNNTTC	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	224, 309, 318
NdeII	GATC	2 cut(s)	32, 78
NlaIII	CATG	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	89, 114, 163, 200
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	285, 305, 308, 311
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	94, 175
PsuI	RGATCY	1 cut(s)	78
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
SatI	GCNGC	4 cut(s)	284, 304, 307, 310
Sau3AI	GATC	2 cut(s)	32, 78
Sau96I	GGNCC	2 cut(s)	94, 175
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	4 cut(s)	72, 153, 162, 188
SexAI	ACCWGGT	1 cut(s)	147
SinI	GGWCC	2 cut(s)	94, 175
SsiI	CCGC	4 cut(s)	55, 220, 306, 309
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	2 cut(s)	123, 140
TaqII	GACCGA	1 cut(s)	82
TauI	GCSGC	2 cut(s)	309, 312
TfiI	GAWTC	4 cut(s)	89, 114, 163, 200
TseI	GCWGC	2 cut(s)	283, 303
TspDTI	ATGAA	2 cut(s)	5, 263
TspGWI	ACGGA	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	2 cut(s)	94, 175
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.