Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Forward (+)

19666068 .. 19672968

Gene Structure 6901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTCTCCCTTTGTATTCGGCAGTTTCATTAATCAAGACCAGGTGGTGGAGCTGATTCAGCAGATGGATCGGCACGGCTCCTCATCTATGGATTCGCCGGCGAAGATTGGGCGGTTCGCCAAGGAGTCGGAAGAGAACATGAAGTTTCTCGCCAAGTGCGACGGGTTTGTGGCGCCGCTCGTCGAGGCTCTCGGCGGCGGCAAGGCCAGCGACGGAGGTCACCGGAGCAACAACATTTGCATTCTCAAGCAAATCGTCGAATCATTCATTTTCCGATTGGAGAAATCCAAGAGAATGATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

101

Amino Acids

11.21

Weight (kDa)

7.8

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	178
AciI	CCGC	4 cut(s)	112, 176, 195, 198
AclWI	GGATC	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	3 cut(s)	176, 196, 199
BlsI	GCNGC	3 cut(s)	177, 197, 200
Bme1390I	CCNGG	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	79, 174
BmrFI	CCNGG	1 cut(s)	41
BoxI	GACNNNNGTC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	98, 223
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	4 cut(s)	112, 176, 195, 198
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	79, 174
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	99, 208
BstEII	GGTNACC	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 207
BstNI	CCWGG	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	99, 208
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	39
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	52, 78, 188, 206
CviKI_1	RGCY	4 cut(s)	52, 78, 188, 206
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	89, 140
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	176, 196, 199
Fsp4HI	GCNGC	3 cut(s)	176, 196, 199
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	176, 196, 199
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	98, 223
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	55, 92, 125, 260
HpaII	CCGG	2 cut(s)	98, 223
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	130, 275
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	4 cut(s)	164, 185, 215, 260
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 207
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	49, 83, 225
LpnPI	CCDG	5 cut(s)	26, 53, 111, 220, 236
MabI	ACCWGGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	115, 143
MluCI	AATT	1 cut(s)	301
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	91, 178, 209
MreI	CGCCGGCG	1 cut(s)	97
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	1 cut(s)	30
MspI	CCGG	2 cut(s)	98, 223
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	58, 207
NaeI	GCCGGC	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	1 cut(s)	67
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	79, 174
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	55, 92, 260
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	177, 197, 200
PleI	GAGTC	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	79, 174
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	176, 196, 199
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	3 cut(s)	45, 54, 220
SexAI	ACCWGGT	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	4 cut(s)	112, 176, 195, 198
SspDI	GGCGCC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	183, 258
TasI	AATT	1 cut(s)	301
TauI	GCSGC	3 cut(s)	178, 198, 201
TfiI	GAWTC	3 cut(s)	55, 92, 260
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	16, 155, 256
TspGWI	ACGGA	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.