Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Reverse (-)

16792813 .. 16793399

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACCGGCACAACTCCTCATCTGTGGATTCGCTGGCGAATATTGTGTGGTTCGCCAAGGAGTCGGAAGAGAACATGAAGTTTCTCGCCAAGTACGACAGGTTTGTGGCGCTGCTCGTCGAGGCCCTCGGCGGCGGCAAGGCCAGCGACGGAGGTCACGGGAGCAACAACATTCGCACTCTCAAGCAAATCGTTAGGATCATTCATTTTCTAATTGGAGAAATCCAAGAGAATGATAAATTGATGAGATTGATGTTGAAGAAGAGCGGCGCCGGCGGCAGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAGGAAGCCTCGAGTCTCGAATCGCCTCGGTTAGGGAAGGGCGGGCAAAGATTTACGAGGCGGAGGAGGAGGAAGGAGGTGACTGCTGTGTCTCGGGGATCGGCACGAAATGGGCCAGGCGAATCCATGGTTGCGTCGATGGGGTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

156

Amino Acids

16.96

Weight (kDa)

6.43

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	6 - 116	1.9e-08	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	6 cut(s)	132, 135, 267, 276, 358, 377
AclWI	GGATC	2 cut(s)	206, 422
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	336, 412
AlwI	GGATC	2 cut(s)	206, 422
Ama87I	CYCGRG	2 cut(s)	326, 409
AoxI	GGCC	3 cut(s)	123, 141, 429
ApeKI	GCWGC	2 cut(s)	112, 301
AspLEI	GCGC	2 cut(s)	112, 272
AspS9I	GGNCC	3 cut(s)	4, 124, 429
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	2 cut(s)	326, 409
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	99, 288
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	336, 412
BfoI	RGCGCY	2 cut(s)	113, 273
BisI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
BlsI	GCNGC	6 cut(s)	114, 134, 137, 269, 278, 303
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	326, 409
BmgT120I	GGNCC	3 cut(s)	4, 124, 429
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	433
BoxI	GACNNNNGTC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	57, 127, 342, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	2 cut(s)	6, 272
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	4 cut(s)	57, 127, 342, 442
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	7, 395, 398
BseXI	GCAGC	2 cut(s)	99, 288
BshFI	GGCC	3 cut(s)	125, 143, 431
BshNI	GGYRCC	1 cut(s)	269
BsiHKCI	CYCGRG	2 cut(s)	326, 409
BsiSI	CCGG	2 cut(s)	7, 273
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	336, 412
BsnI	GGCC	3 cut(s)	125, 143, 431
BsoBI	CYCGRG	2 cut(s)	326, 409
Bsp143I	GATC	2 cut(s)	198, 414
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	6 cut(s)	132, 135, 267, 276, 358, 377
BspANI	GGCC	3 cut(s)	125, 143, 431
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	206, 422
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	6, 272
BssAI	RCCGGY	2 cut(s)	6, 272
BssECI	CCNNGG	4 cut(s)	57, 127, 342, 442
BssMI	GATC	2 cut(s)	198, 414
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	57, 442
Bst2UI	CCWGG	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	63, 257
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	36, 145, 274, 360
BstDSI	CCRYGG	1 cut(s)	442
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstH2I	RGCGCY	2 cut(s)	113, 273
BstHHI	GCGC	2 cut(s)	112, 272
BstKTI	GATC	2 cut(s)	201, 417
BstMAI	GTCTC	2 cut(s)	336, 412
BstMBI	GATC	2 cut(s)	198, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 273, 276, 285
BstNI	CCWGG	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	99, 288
BsuRI	GGCC	3 cut(s)	125, 143, 431
BtgI	CCRYGG	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	36, 145, 274, 360
CfoI	GCGC	2 cut(s)	112, 272
Cfr10I	RCCGGY	2 cut(s)	6, 272
Cfr13I	GGNCC	3 cut(s)	4, 124, 429
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	76, 443
CviJI	RGCY	5 cut(s)	125, 143, 293, 324, 431
CviKI_1	RGCY	5 cut(s)	125, 143, 293, 324, 431
CviQI	GTAC	1 cut(s)	94
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	2 cut(s)	200, 416
DpnII	GATC	2 cut(s)	198, 414
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	63, 257
EarI	CTCTTC	2 cut(s)	63, 257
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	57, 442
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	326, 409
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	57, 442
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	57, 442
FaeI	CATG	2 cut(s)	79, 446
FaiI	YATR	2 cut(s)	77, 444
FatI	CATG	2 cut(s)	75, 442
FauI	CCCGC	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
Fsp4HI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
GlaI	GCGC	2 cut(s)	111, 271
GluI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
HaeII	RGCGCY	2 cut(s)	113, 273
HaeIII	GGCC	3 cut(s)	125, 143, 431
HapII	CCGG	2 cut(s)	7, 273
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	2 cut(s)	112, 272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	79, 446
Hin6I	GCGC	2 cut(s)	110, 270
HinP1I	GCGC	2 cut(s)	110, 270
HinfI	GANTC	5 cut(s)	29, 62, 329, 336, 438
HpaII	CCGG	2 cut(s)	7, 273
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	3 cut(s)	122, 152, 455
HpyAV	CCTTC	2 cut(s)	347, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 273, 276, 285
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	79, 446
HspAI	GCGC	2 cut(s)	110, 270
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	198, 414
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	7 cut(s)	20, 20, 85, 157, 286, 418, 445
Lsp1109I	GCAGC	2 cut(s)	99, 288
MaeIII	GTNAC	2 cut(s)	155, 395
MalI	GATC	2 cut(s)	200, 416
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	198, 414
MboII	GAAGA	3 cut(s)	80, 271, 274
MluCI	AATT	2 cut(s)	213, 239
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	71, 338
MmeI	TCCRAC	2 cut(s)	45, 337
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	2 cut(s)	7, 273
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	144, 273, 276, 285
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	2 cut(s)	198, 414
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	79, 446
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	155, 395
PaeR7I	CTCGAG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	29, 336, 438
PkrI	GCNGC	6 cut(s)	114, 134, 137, 269, 278, 303
PleI	GAGTC	2 cut(s)	70, 337
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	70, 337
PshAI	GACNNNNGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	4, 124, 429
PspXI	VCTCGAGB	1 cut(s)	326
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	6 cut(s)	113, 133, 136, 268, 277, 302
Sau3AI	GATC	2 cut(s)	198, 414
Sau96I	GGNCC	3 cut(s)	4, 124, 429
SchI	GAGTC	2 cut(s)	71, 338
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	3 cut(s)	104, 157, 397
SfoI	GGCGCC	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	326
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	182, 326
SmoI	CTYRAG	2 cut(s)	182, 326
Sse9I	AATT	2 cut(s)	213, 239
SsiI	CCGC	6 cut(s)	132, 135, 267, 276, 358, 377
SspDI	GGCGCC	1 cut(s)	269
SspI	AATATT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	57, 442
TaqI	TCGA	4 cut(s)	120, 327, 334, 453
TasI	AATT	2 cut(s)	213, 239
TauI	GCSGC	4 cut(s)	135, 138, 270, 279
TfiI	GAWTC	3 cut(s)	29, 336, 438
TseFI	GTSAC	2 cut(s)	155, 395
TseI	GCWGC	2 cut(s)	112, 301
Tsp45I	GTSAC	2 cut(s)	155, 395
TspDTI	ATGAA	2 cut(s)	92, 194
TspGWI	ACGGA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.