Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Reverse (-)

66447632 .. 66448072

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACCGGCACAGCTCCTCATCTGTGGATTCGCTGGCGAAGATTGGGCGGTTCGCCAAGGAGTCAGAAGAGAATAAGAACTTTCTCGCCAAGTGCGATGGGTTTGTGGCGCTGCTCGTCAAGGCTCTCGGCGGTGGCAAGGCCAGCGACGGAGGTCACGGGAGCAACAACATTCGCATTCTCAAGCAAATCGTCAGGATCATTCATTTTCTGATCGGAGAAATCCAAGAGAATGATGAATTGATGAGATTGATGTTGAAAAAGAGCGACGCCGGCGCCAGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAGGAAGCCCAGAGTCTCGAATCGCCTCGGCTAGGGTTATGGAGTCCAACTCTGCGCCGTCAAGTCTCTGTCCAAATTTTTGTCGGACTCGAACTCCACGACGTCGACGATCGAGAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

10.03

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	7 - 120	1.9e-12	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	2 cut(s)	49, 132
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	3 cut(s)	270, 276, 418
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	336, 386
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	112, 301
ApoI	RAATTY	1 cut(s)	391
AspLEI	GCGC	3 cut(s)	112, 278, 373
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	99, 288
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	336, 386
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	2 cut(s)	113, 279
BisI	GCNGC	2 cut(s)	113, 302
BlsI	GCNGC	2 cut(s)	114, 303
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	277
BoxI	GACNNNNGTC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	3 cut(s)	270, 276, 418
BsaJI	CCNNGG	2 cut(s)	57, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	2 cut(s)	6, 272
BseDI	CCNNGG	2 cut(s)	57, 342
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	99, 288
Bsh1285I	CGRYCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	7, 273
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	336, 386
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	198, 213, 425
BspACI	CCGC	2 cut(s)	49, 132
BspANI	GGCC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	6, 272
BssAI	RCCGGY	2 cut(s)	6, 272
BssECI	CCNNGG	2 cut(s)	57, 342
BssMI	GATC	3 cut(s)	198, 213, 425
BssNI	GRCGYC	3 cut(s)	270, 276, 418
BssT1I	CCWWGG	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	3 cut(s)	270, 276, 418
BstC8I	GCNNGC	3 cut(s)	36, 145, 274
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstH2I	RGCGCY	2 cut(s)	113, 279
BstHHI	GCGC	3 cut(s)	112, 278, 373
BstKTI	GATC	3 cut(s)	201, 216, 428
BstMAI	GTCTC	2 cut(s)	336, 386
BstMBI	GATC	3 cut(s)	198, 213, 425
BstMCI	CGRYCG	1 cut(s)	428
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 273
BstPAI	GACNNNNGTC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	99, 288
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	36, 145, 274
CfoI	GCGC	3 cut(s)	112, 278, 373
Cfr10I	RCCGGY	2 cut(s)	6, 272
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	278
CviJI	RGCY	6 cut(s)	15, 125, 143, 293, 324, 347
CviKI_1	RGCY	6 cut(s)	15, 125, 143, 293, 324, 347
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	3 cut(s)	200, 215, 427
DpnII	GATC	3 cut(s)	198, 213, 425
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	57
FaiI	YATR	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	113, 302
Fsp4HI	GCNGC	2 cut(s)	113, 302
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	3 cut(s)	111, 277, 372
GluI	GCNGC	2 cut(s)	113, 302
HaeII	RGCGCY	2 cut(s)	113, 279
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	7, 273
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	3 cut(s)	112, 278, 373
Hin1I	GRCGYC	3 cut(s)	270, 276, 418
Hin6I	GCGC	3 cut(s)	110, 276, 371
HinP1I	GCGC	3 cut(s)	110, 276, 371
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	6 cut(s)	29, 62, 329, 336, 359, 403
HpaII	CCGG	2 cut(s)	7, 273
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	5 cut(s)	67, 213, 218, 402, 440
Hpy188III	TCNNGA	3 cut(s)	196, 333, 429
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	5 cut(s)	152, 272, 420, 423, 426
HpyCH4IV	ACGT	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 273
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	3 cut(s)	270, 276, 418
HspAI	GCGC	3 cut(s)	110, 276, 371
KasI	GGCGCC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	198, 213, 425
LmnI	GCTCC	2 cut(s)	20, 162
LpnPI	CCDG	7 cut(s)	20, 20, 157, 181, 286, 292, 339
Lsp1109I	GCAGC	2 cut(s)	99, 288
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	200, 215, 427
MboI	GATC	3 cut(s)	198, 213, 425
MboII	GAAGA	2 cut(s)	52, 80
MluCI	AATT	2 cut(s)	239, 391
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	4 cut(s)	71, 338, 368, 397
MmeI	TCCRAC	3 cut(s)	337, 380, 387
MnlI	CCTC	3 cut(s)	28, 146, 352
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	2 cut(s)	7, 273
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	144, 273
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	3 cut(s)	198, 213, 425
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	2 cut(s)	108, 323
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 412, 421
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	29, 336
PkrI	GCNGC	2 cut(s)	114, 303
Ple19I	CGATCG	1 cut(s)	428
PleI	GAGTC	4 cut(s)	70, 337, 367, 397
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	4 cut(s)	70, 337, 367, 397
PshAI	GACNNNNGTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	428
SalI	GTCGAC	1 cut(s)	420
SatI	GCNGC	2 cut(s)	113, 302
Sau3AI	GATC	3 cut(s)	198, 213, 425
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	71, 338, 368, 397
SetI	ASST	3 cut(s)	17, 157, 421
SfoI	GGCGCC	1 cut(s)	277
SgrAI	CRCCGGYG	1 cut(s)	272
SgrDI	CGTCGACG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	239, 391
SsiI	CCGC	2 cut(s)	49, 132
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	334, 406, 421, 428
TasI	AATT	2 cut(s)	239, 391
TfiI	GAWTC	2 cut(s)	29, 336
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	112, 301
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	194, 252
TspGWI	ACGGA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.