Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Reverse (-)

62973326 .. 62973769

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG469700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACCGGCACAGCTCCTCATCTGTGGATTCGCTGGCGAAGATTGCGCGGTTCCCCAAGGAGTCAGAAGAGAACAGGAAGTTTCTCGCCAAGTGCGACAGGTTTGTGGCGCTGCTCGTCGAGGCTCTCGGCGGCGGCAAGGCCAACGAAGGAGGTCACGGGAGCAACAACATTCGCATTCTCAAGCAAATCGTCAGGATCATTCATTTTCTGATTGGAGAAATCCAAGAGAATGATGAATTGATGAGATTGATGTTGAAGAAGAGCGGCGCTGCCGCTGGTGGAGATTGCTTGGCTTCTCTGCTGCTTGTTCTCCAACAAGGAAGCCCCGAGTCTCGAATCGCCTCGGCTAGGGTTATGGAGTCCAACTCTGCGCCATCAAGTCTCTGTCCAAATTTTTGTCGGACTCGAACTCCACAACGTCGACGATCGAGAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

147

Amino Acids

16.2

Weight (kDa)

9.95

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	7 - 121	4.5e-13	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	1 cut(s)	49
AciI	CCGC	5 cut(s)	49, 132, 135, 267, 276
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	339, 389
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	112, 272, 304
ApoI	RAATTY	1 cut(s)	394
AspLEI	GCGC	4 cut(s)	49, 112, 272, 376
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	99, 259, 291
BccI	CCATC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	339, 389
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	113, 273
BisI	GCNGC	7 cut(s)	113, 133, 136, 268, 273, 276, 305
BlsI	GCNGC	7 cut(s)	114, 134, 137, 269, 274, 277, 306
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	57, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	57, 345
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	3 cut(s)	99, 259, 291
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	339, 389
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	198, 428
BspACI	CCGC	5 cut(s)	49, 132, 135, 267, 276
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	57, 345
BssMI	GATC	2 cut(s)	198, 428
BssT1I	CCWWGG	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	63, 257
BstC8I	GCNNGC	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	113, 273
BstHHI	GCGC	4 cut(s)	49, 112, 272, 376
BstKTI	GATC	2 cut(s)	201, 431
BstMAI	GTCTC	2 cut(s)	339, 389
BstMBI	GATC	2 cut(s)	198, 428
BstMCI	CGRYCG	1 cut(s)	431
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	3 cut(s)	99, 259, 291
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	4 cut(s)	49, 112, 272, 376
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	15, 125, 143, 296, 327, 350
CviKI_1	RGCY	6 cut(s)	15, 125, 143, 296, 327, 350
DpnI	GATC	2 cut(s)	200, 430
DpnII	GATC	2 cut(s)	198, 428
Eam1104I	CTCTTC	2 cut(s)	63, 257
EarI	CTCTTC	2 cut(s)	63, 257
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaiI	YATR	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	7 cut(s)	113, 133, 136, 268, 273, 276, 305
Fsp4HI	GCNGC	7 cut(s)	113, 133, 136, 268, 273, 276, 305
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	4 cut(s)	48, 111, 271, 375
GluI	GCNGC	7 cut(s)	113, 133, 136, 268, 273, 276, 305
HaeII	RGCGCY	2 cut(s)	113, 273
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	4 cut(s)	49, 112, 272, 376
Hin6I	GCGC	4 cut(s)	47, 110, 270, 374
HinP1I	GCGC	4 cut(s)	47, 110, 270, 374
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	6 cut(s)	29, 62, 332, 339, 362, 406
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	4 cut(s)	67, 213, 405, 443
Hpy188III	TCNNGA	3 cut(s)	196, 336, 432
Hpy8I	GTNNAC	1 cut(s)	425
Hpy99I	CGWCG	3 cut(s)	122, 426, 429
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	421
HspAI	GCGC	4 cut(s)	47, 110, 270, 374
Kzo9I	GATC	2 cut(s)	198, 428
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	20, 162
LpnPI	CCDG	6 cut(s)	20, 20, 61, 85, 181, 264
Lsp1109I	GCAGC	3 cut(s)	99, 259, 291
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	200, 430
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	198, 428
MboII	GAAGA	4 cut(s)	52, 80, 271, 274
MluCI	AATT	2 cut(s)	239, 394
MlyI	GAGTC	4 cut(s)	71, 341, 371, 400
MmeI	TCCRAC	3 cut(s)	340, 383, 390
MnlI	CCTC	4 cut(s)	28, 115, 146, 355
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	198, 428
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	2 cut(s)	108, 326
NmuCI	GTSAC	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	29, 339
PkrI	GCNGC	7 cut(s)	114, 134, 137, 269, 274, 277, 306
Ple19I	CGATCG	1 cut(s)	431
PleI	GAGTC	4 cut(s)	70, 340, 370, 400
PpsI	GAGTC	4 cut(s)	70, 340, 370, 400
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	431
SalI	GTCGAC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	7 cut(s)	113, 133, 136, 268, 273, 276, 305
Sau3AI	GATC	2 cut(s)	198, 428
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	71, 341, 371, 400
SetI	ASST	4 cut(s)	17, 104, 157, 424
SgrDI	CGTCGACG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	239, 394
SsiI	CCGC	5 cut(s)	49, 132, 135, 267, 276
SspMI	CTAG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	5 cut(s)	120, 337, 409, 424, 431
TasI	AATT	2 cut(s)	239, 394
TauI	GCSGC	4 cut(s)	135, 138, 270, 278
TfiI	GAWTC	2 cut(s)	29, 339
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	112, 272, 304
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	194, 252
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.