RchiOBHm_Chr2g0110021

Nodulation receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
21406607 .. 21411918
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48377

Sequence Viewer

Length: 1887 bp
ATGGGTAATGGGTCAAATTACAGGGAGCTTGCTTTGAATGTGACAGCAAATGGGTATCTGAATCTGACTCTGGTTAAGGCGTTTGAGTCTGAAAATGGACCCATTTGCAATGCCTATGAGATTTTGCAGGTGCACCAGTTGGTTCAGGAGACTAACACAGATGACGTGGAAGTGATTTTGGAGGCGAGGAGTGAGTTGCTGGAGAATAATCAGATGAATGAAGTTTGGGAAGGGTGGACTGCAGACCCATGTCTTCCTGTTCCCTGGAATGGTATAGGTTGTGAAACTGTTAATGGTGTCACTGTCATTACCAAACTGGATCTTTCTTCTGGTATTCAGAGAGGGTCTGATGAAGAACGCAAACTTCTAGGACCATTTCCTAAAAGCATCACAAAGCTGACTCACCTAAAATTCCTGAACCTCAGCAACAATGGGTTTACTGGCCAAATTCCAGAATTTCTTGAACGTTCCATGTTGATTTCAGTGGATCTGAGCCATAATAATCTTTCGGGGCCACTTCCAAATTCTCTTGCCTCACAACCAAATTTGGAAACACTAAATTTTGGCTGCAATCCTCAGCTTACCAAAGTTAGTCCATCAACCTTCAATGGCTTAAAATTTACAACAGACCATGGAAATTGTGGTGTGACTGGTGTCCAAAAATTCTCGAAACGAGGAATCATCATTGGTGCTGCTGCTGCATCTGGATCTTTACTAGTAACAGCTGTAGCCGGGATTTTTTTTTTCATGTGGAGACAAAAGTTTATGCCTCGAGGAAAATTTGATAAGAACCCGTATCCCATGGCAAAGAATTTAATTTTCTCATTACCTAGCATGGATGATCTGATGATGAAATCAATAGCAATAGAGACATTTACTCTTGAGTACCTAGAGGCTGTCACCCAAAGTTACAAAACGCTGATAGGTGAAGGAGGTTTTGGGTCTGTTTACAGTGGCACTCTAACTGATGGTCAGGAAGTGGCAGTGAAGGTTCGATCAGCAACATCAACCCAAGGGACTCGGGAGTTTGATAATGAGCTAAATCTTCTGTCAACTATTCGGCATGAGAACCTTGTGCCTCTTCTTGGTTATTGTAATGAAAAGGACCAAGAAATTCTTGTTTATCCATTTATGTCCAATGGCTCTCTGCAAGATCGCCTATATGGGGAAGCAGCAAAAAGGAAAATTCTGGACTGGCCAACAAGACTATCAATTGCCCTTGGTGCTGCTCGAGGTTTGACACATCTGCACAATTTTGCTGGGCGTTGCATTATACACAGGGATGTGAAATCAAGTAATATACTTCTGGATCAAAGCATGTGTGCCAAGGTGGCAGACTTTGGTTTTTCAAAATATGCTCCTCAAGAAGGTGACAGTGGTGCTTCTCTGGAAGTTAGAGGGACAGCTGGATACCTGGATCCAGAGTACTACACAACCCATCATTTATCAGCAAAAAGTGATGTGTTTAGCTTTGGCGTGGTTCTACTTGAAATTGTTACTGGTCGGGAACCTCTGAACATACACAGGCCACGTCCCGAGTGGAGCTTAGTCGAATGGGCGAAACCCTATATAAGAGAGTCAAAGATTGATGAAATTGTGGATCCAAACATAAAAGGAGCATACCATGCAGAAGCTATGTGGAGGGTGGTGGAGGTAGCATTGTCATGTATTGAGCCCTTCTCTGCTTACCGACCAGGCATGGCTGACATTGTTCGCGAGCTAGAGGATTCTCTGATAATAGAGAACAATGCATCAGAATACATGAGATCCATAGAAAGTACTGGATCTAATCGCTTTTCCATAATCATGGACAGAAGGATACCGCCACCTACTCCTTCGGAACCCTCAACTATTTTGACACAAATGGCCCCTCCAGAGCCAAGATAG

Protein Analysis

628

Amino Acids

69.55

Weight (kDa)

5.36

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 305 - 574 1.3e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 305 - 507 1e-39 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
AbsI CCTCGAGG 1 cut(s) 771
Acc36I ACCTGC 1 cut(s) 118
AccII CGCG 1 cut(s) 1716
AciI CCGC 1 cut(s) 1823
AclI AACGTT 1 cut(s) 466
AcoI YGGCCR 2 cut(s) 442, 1196
AfaI GTAC 3 cut(s) 887, 1427, 1780
AfiI CCNNNNNNNGG 4 cut(s) 269, 1085, 1165, 1367
AgsI TTSAA 5 cut(s) 37, 464, 607, 1350, 1490
AhlI ACTAGT 1 cut(s) 715
AjiI CACGTC 2 cut(s) 166, 1532
AjnI CCWGG 3 cut(s) 263, 1413, 1693
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 143, 748, 863
Alw44I GTGCAC 1 cut(s) 131
Ama87I CYCGRG 4 cut(s) 771, 1020, 1230, 1535
AoxI GGCC 5 cut(s) 442, 512, 1196, 1526, 1866
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 6 cut(s) 567, 692, 695, 698, 1172, 1226
AspS9I GGNCC 5 cut(s) 98, 371, 512, 1105, 1867
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 4 cut(s) 395, 892, 938, 1382
AvaI CYCGRG 4 cut(s) 771, 1020, 1230, 1535
AvaII GGWCC 3 cut(s) 98, 371, 1105
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 2 cut(s) 444, 1198
BamHI GGATCC 2 cut(s) 1417, 1600
BanII GRGCYC 1 cut(s) 1677
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 2 cut(s) 422, 576
BbvI GCAGC 6 cut(s) 554, 679, 682, 685, 1184, 1213
BccI CCATC 3 cut(s) 604, 962, 1446
BciT130I CCWGG 3 cut(s) 265, 1415, 1695
BciVI GTATCC 3 cut(s) 807, 1403, 1812
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 3 cut(s) 143, 748, 863
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 5 cut(s) 368, 716, 831, 890, 1721
BfmI CTRYAG 2 cut(s) 240, 726
BfuAI ACCTGC 1 cut(s) 118
BfuI GTATCC 3 cut(s) 807, 1403, 1812
BglI GCCNNNNNGGC 1 cut(s) 1331
BisI GCNGC 6 cut(s) 568, 693, 696, 699, 1173, 1227
BlsI GCNGC 6 cut(s) 569, 694, 697, 700, 1174, 1228
BmcAI AGTACT 2 cut(s) 1427, 1780
Bme1390I CCNGG 4 cut(s) 265, 733, 1415, 1695
Bme18I GGWCC 3 cut(s) 98, 371, 1105
BmeT110I CYCGRG 4 cut(s) 771, 1020, 1230, 1535
BmgBI CACGTC 2 cut(s) 166, 1532
BmgT120I GGNCC 5 cut(s) 98, 371, 512, 1105, 1867
BmiI GGNNCC 7 cut(s) 100, 513, 1419, 1509, 1602, 1842, 1869
BmrFI CCNGG 4 cut(s) 265, 733, 1415, 1695
BmsI GCATC 3 cut(s) 396, 710, 1760
BoxI GACNNNNGTC 2 cut(s) 249, 653
BpiI GAAGAC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 1664, 1696
BpmI CTGGAG 2 cut(s) 221, 1857
Bpu10I CCTNAGC 2 cut(s) 422, 576
BpuEI CTTGAG 2 cut(s) 902, 1347
BpuMI CCSGG 1 cut(s) 733
BsaJI CCNNGG 6 cut(s) 263, 631, 801, 1012, 1219, 1326
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 1085, 1165, 1367
Bse1I ACTGG 7 cut(s) 136, 321, 445, 655, 1199, 1504, 1786
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 3 cut(s) 265, 1415, 1695
BseDI CCNNGG 6 cut(s) 263, 631, 801, 1012, 1219, 1326
BseGI GGATG 2 cut(s) 844, 1288
BseLI CCNNNNNNNGG 4 cut(s) 269, 1085, 1165, 1367
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 436, 482, 590
BseNI ACTGG 7 cut(s) 136, 321, 445, 655, 1199, 1504, 1786
BseRI GAGGAG 2 cut(s) 202, 1350
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 6 cut(s) 554, 679, 682, 685, 1184, 1213
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 1 cut(s) 1716
BshFI GGCC 5 cut(s) 444, 514, 1198, 1528, 1868
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 4 cut(s) 771, 1020, 1230, 1535
BsiSI CCGG 1 cut(s) 732
BslFI GGGAC 3 cut(s) 1030, 1414, 1518
BslI CCNNNNNNNGG 4 cut(s) 269, 1085, 1165, 1367
BsmAI GTCTC 3 cut(s) 143, 748, 863
BsmFI GGGAC 3 cut(s) 1030, 1414, 1518
BsnI GGCC 5 cut(s) 444, 514, 1198, 1528, 1868
BsoBI CYCGRG 4 cut(s) 771, 1020, 1230, 1535
Bsp1286I GDGCHC 2 cut(s) 135, 1677
Bsp19I CCATGG 2 cut(s) 631, 801
Bsp68I TCGCGA 1 cut(s) 1716
BspACI CCGC 1 cut(s) 1823
BspANI GGCC 5 cut(s) 444, 514, 1198, 1528, 1868
BspCNI CTCAG 3 cut(s) 435, 483, 589
BspFNI CGCG 1 cut(s) 1716
BspLI GGNNCC 7 cut(s) 100, 513, 1419, 1509, 1602, 1842, 1869
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 7 cut(s) 136, 321, 445, 655, 1199, 1504, 1786
BssECI CCNNGG 6 cut(s) 263, 631, 801, 1012, 1219, 1326
BssT1I CCWWGG 5 cut(s) 631, 801, 1012, 1219, 1326
Bst2UI CCWGG 3 cut(s) 265, 1415, 1695
Bst4CI ACNGT 4 cut(s) 289, 304, 953, 1376
Bst6I CTCTTC 1 cut(s) 1086
BstAPI GCANNNNNTGC 1 cut(s) 1625
BstC8I GCNNGC 2 cut(s) 30, 1718
BstDEI CTNAG 4 cut(s) 422, 491, 576, 1546
BstDSI CCRYGG 2 cut(s) 631, 801
BstENI CCTNNNNNAGG 1 cut(s) 1365
BstF5I GGATG 2 cut(s) 844, 1288
BstFNI CGCG 1 cut(s) 1716
BstMAI GTCTC 3 cut(s) 143, 748, 863
BstMWI GCNNNNNNNGC 4 cut(s) 698, 1223, 1331, 1625
BstNI CCWGG 3 cut(s) 265, 1415, 1695
BstNSI RCATGY 1 cut(s) 1321
BstPAI GACNNNNGTC 2 cut(s) 249, 653
BstSCI CCNGG 4 cut(s) 263, 731, 1413, 1693
BstSFI CTRYAG 2 cut(s) 240, 726
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 1716
BstV1I GCAGC 6 cut(s) 554, 679, 682, 685, 1184, 1213
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 7 cut(s) 319, 487, 707, 1417, 1600, 1766, 1784
BstXI CCANNNNNNTGG 1 cut(s) 1807
BstYI RGATCY 7 cut(s) 319, 487, 707, 1417, 1600, 1766, 1784
BsuI GTATCC 3 cut(s) 807, 1403, 1812
BsuRI GGCC 5 cut(s) 444, 514, 1198, 1528, 1868
BtgI CCRYGG 2 cut(s) 631, 801
BtrI CACGTC 2 cut(s) 166, 1532
BtsCI GGATG 2 cut(s) 844, 1288
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 5 cut(s) 300, 489, 958, 990, 1381
BtuMI TCGCGA 1 cut(s) 1716
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 30, 1718
Cfr13I GGNCC 5 cut(s) 98, 371, 512, 1105, 1867
Csp6I GTAC 3 cut(s) 886, 1426, 1779
CviQI GTAC 3 cut(s) 886, 1426, 1779
DdeI CTNAG 4 cut(s) 422, 491, 576, 1546
EaeI YGGCCR 2 cut(s) 442, 1196
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
Eco130I CCWWGG 5 cut(s) 631, 801, 1012, 1219, 1326
Eco24I GRGCYC 1 cut(s) 1677
Eco47I GGWCC 3 cut(s) 98, 371, 1105
Eco88I CYCGRG 4 cut(s) 771, 1020, 1230, 1535
EcoNI CCTNNNNNAGG 1 cut(s) 1365
EcoRII CCWGG 3 cut(s) 263, 1413, 1693
EcoT14I CCWWGG 5 cut(s) 631, 801, 1012, 1219, 1326
EcoT22I ATGCAT 1 cut(s) 1753
EcoT38I GRGCYC 1 cut(s) 1677
ErhI CCWWGG 5 cut(s) 631, 801, 1012, 1219, 1326
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 3 cut(s) 1030, 1414, 1518
Fnu4HI GCNGC 6 cut(s) 568, 693, 696, 699, 1173, 1227
FokI GGATG 2 cut(s) 851, 1295
FriOI GRGCYC 1 cut(s) 1677
Fsp4HI GCNGC 6 cut(s) 568, 693, 696, 699, 1173, 1227
FspBI CTAG 5 cut(s) 368, 716, 831, 890, 1721
GluI GCNGC 6 cut(s) 568, 693, 696, 699, 1173, 1227
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 2 cut(s) 221, 1857
HaeIII GGCC 5 cut(s) 444, 514, 1198, 1528, 1868
HapII CCGG 1 cut(s) 732
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HinfI GANTC 8 cut(s) 61, 67, 86, 400, 678, 1018, 1577, 1727
HpaII CCGG 1 cut(s) 732
HphI GGTGA 4 cut(s) 395, 892, 938, 1382
Hpy166II GTNNAC 5 cut(s) 133, 237, 438, 949, 1053
Hpy8I GTNNAC 5 cut(s) 133, 237, 438, 949, 1053
HpyAV CCTTC 8 cut(s) 224, 613, 923, 982, 1361, 1687, 1809, 1845
HpyCH4III ACNGT 4 cut(s) 289, 304, 953, 1376
HpyCH4IV ACGT 3 cut(s) 165, 466, 1531
HpyF10VI GCNNNNNNNGC 4 cut(s) 698, 1223, 1331, 1625
HpyF3I CTNAG 4 cut(s) 422, 491, 576, 1546
HpySE526I ACGT 3 cut(s) 165, 466, 1531
LmnI GCTCC 4 cut(s) 25, 1363, 1542, 1616
Lsp1109I GCAGC 6 cut(s) 554, 679, 682, 685, 1184, 1213
LweI GCATC 3 cut(s) 396, 710, 1760
MaeI CTAG 5 cut(s) 368, 716, 831, 890, 1721
MaeII ACGT 3 cut(s) 165, 466, 1531
MaeIII GTNAC 8 cut(s) 40, 298, 646, 718, 898, 908, 1370, 1495
MboII GAAGA 5 cut(s) 245, 318, 365, 1037, 1073
MfeI CAATTG 1 cut(s) 1212
MflI RGATCY 7 cut(s) 319, 487, 707, 1417, 1600, 1766, 1784
MhlI GDGCHC 2 cut(s) 135, 1677
MlsI TGGCCA 2 cut(s) 444, 1198
MluNI TGGCCA 2 cut(s) 444, 1198
MlyI GAGTC 5 cut(s) 61, 95, 394, 1012, 1586
Mox20I TGGCCA 2 cut(s) 444, 1198
Mph1103I ATGCAT 1 cut(s) 1753
MscI TGGCCA 2 cut(s) 444, 1198
MseI TTAA 4 cut(s) 75, 291, 614, 815
MslI CAYNNNNRTG 3 cut(s) 1281, 1663, 1805
Msp20I TGGCCA 2 cut(s) 444, 1198
MspA1I CMGCKG 2 cut(s) 725, 1406
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 4 cut(s) 265, 733, 1415, 1695
MunI CAATTG 1 cut(s) 1212
MvaI CCWGG 3 cut(s) 265, 1415, 1695
MvnI CGCG 1 cut(s) 1716
MwoI GCNNNNNNNGC 4 cut(s) 698, 1223, 1331, 1625
NciI CCSGG 1 cut(s) 733
NcoI CCATGG 2 cut(s) 631, 801
NlaIV GGNNCC 7 cut(s) 100, 513, 1419, 1509, 1602, 1842, 1869
NmuCI GTSAC 5 cut(s) 40, 298, 646, 898, 1370
NruI TCGCGA 1 cut(s) 1716
NsiI ATGCAT 1 cut(s) 1753
NspI RCATGY 1 cut(s) 1321
PaeR7I CTCGAG 2 cut(s) 771, 1230
PaqCI CACCTGC 1 cut(s) 118
PfeI GAWTC 3 cut(s) 61, 678, 1727
PkrI GCNGC 6 cut(s) 569, 694, 697, 700, 1174, 1228
PleI GAGTC 5 cut(s) 61, 94, 394, 1012, 1585
PpsI GAGTC 5 cut(s) 61, 94, 394, 1012, 1585
PshAI GACNNNNGTC 2 cut(s) 249, 653
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 3 cut(s) 263, 1413, 1693
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 3 cut(s) 263, 1413, 1693
PspN4I GGNNCC 7 cut(s) 100, 513, 1419, 1509, 1602, 1842, 1869
PspPI GGNCC 5 cut(s) 98, 371, 512, 1105, 1867
PspXI VCTCGAGB 2 cut(s) 771, 1230
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 7 cut(s) 319, 487, 707, 1417, 1600, 1766, 1784
PvuII CAGCTG 2 cut(s) 725, 1406
RruI TCGCGA 1 cut(s) 1716
RsaI GTAC 3 cut(s) 887, 1427, 1780
RsaNI GTAC 3 cut(s) 886, 1426, 1779
RseI CAYNNNNRTG 3 cut(s) 1281, 1663, 1805
SaqAI TTAA 4 cut(s) 75, 291, 614, 815
SatI GCNGC 6 cut(s) 568, 693, 696, 699, 1173, 1227
Sau96I GGNCC 5 cut(s) 98, 371, 512, 1105, 1867
ScaI AGTACT 2 cut(s) 1427, 1780
SchI GAGTC 5 cut(s) 61, 95, 394, 1012, 1586
ScrFI CCNGG 4 cut(s) 265, 733, 1415, 1695
SduI GDGCHC 2 cut(s) 135, 1677
SfaNI GCATC 3 cut(s) 396, 710, 1760
SfcI CTRYAG 2 cut(s) 240, 726
Sfr274I CTCGAG 2 cut(s) 771, 1230
SinI GGWCC 3 cut(s) 98, 371, 1105
SlaI CTCGAG 2 cut(s) 771, 1230
SmiMI CAYNNNNRTG 3 cut(s) 1281, 1663, 1805
SmlI CTYRAG 4 cut(s) 771, 881, 1230, 1362
SmoI CTYRAG 4 cut(s) 771, 881, 1230, 1362
SpeI ACTAGT 1 cut(s) 715
SsiI CCGC 1 cut(s) 1823
SspMI CTAG 5 cut(s) 368, 716, 831, 890, 1721
StyD4I CCNGG 4 cut(s) 263, 731, 1413, 1693
StyI CCWWGG 5 cut(s) 631, 801, 1012, 1219, 1326
TaaI ACNGT 4 cut(s) 289, 304, 953, 1376
TaiI ACGT 3 cut(s) 168, 469, 1534
TaqI TCGA 5 cut(s) 668, 772, 994, 1231, 1551
TatI WGTACW 2 cut(s) 1425, 1778
TfiI GAWTC 3 cut(s) 61, 678, 1727
Tru1I TTAA 4 cut(s) 75, 291, 614, 815
Tru9I TTAA 4 cut(s) 75, 291, 614, 815
TscAI CASTG 5 cut(s) 307, 489, 958, 990, 1381
TseFI GTSAC 5 cut(s) 40, 298, 646, 898, 1370
TseI GCWGC 6 cut(s) 567, 692, 695, 698, 1172, 1226
Tsp45I GTSAC 5 cut(s) 40, 298, 646, 898, 1370
TspDTI ATGAA 7 cut(s) 230, 234, 366, 736, 866, 1113, 1605
TspRI CASTG 5 cut(s) 307, 489, 958, 990, 1381
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 3 cut(s) 98, 371, 1105
XagI CCTNNNNNAGG 1 cut(s) 1365
XceI RCATGY 1 cut(s) 1321
XcmI CCANNNNNNNNNTGG 2 cut(s) 638, 1536
XhoI CTCGAG 2 cut(s) 771, 1230
XspI CTAG 5 cut(s) 368, 716, 831, 890, 1721
ZrmI AGTACT 2 cut(s) 1427, 1780
Zsp2I ATGCAT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.