Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009981

Physical Location & Seq

Genomic Coordinates Forward (+)

14725366 .. 14728989

Gene Structure 3624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATTCTGAATATAGATATGATAACGGGACCAATAATTCTGCAACCTCCTTTCGCTTTGGGCCTAGGGTCTTGGCAGCAAGCTTGTACCAGCTATCTCCACAGGATTTAACACTAGGGTTGTCATTGGTGAGATTTTCTCCTCTATACAACTACGATCTTATAAAACTCACTGAGGAGAAATATGGATCGGTTCCGAGAATATTCATCGTGGCTGGTCAAGACCATGCAATAGTTTTAGACGTGCAAAATTTCATGATCAAGAATAATCCACCAAATGAAGTGAAAGTGATCAATGGTGCCGATCACATGGTCATGCTATCTAGACCCGTGGAGCTCTTCTCCCACCTCCAGAACATTGCTGAGAAATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Defensin_like

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

5.85

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33607 AT4G14272 AT4G14276 AT4G18823 AT5G08055 AT5G08315 AT5G16453 AT5G19315 AT5G39645 AT5G52605
fragaria_vesca	FvH4_1g19000 FvH4_1g19000
malus_domestica	MD15G1119700.v1.1
prunus_persica	Prupe.6G205300_v2.0.a1 Prupe.6G206000_v2.0.a1 Prupe.6G206400_v2.0.a1 Prupe.6G209700_v2.0.a1 Prupe.6G209800_v2.0.a1
rosa_rugosa	Rorug02G0165200
rosa_samantha	Rh2AG216900 Rh2BG226800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	244
AluBI	AGCT	3 cut(s)	84, 94, 337
AluI	AGCT	3 cut(s)	84, 94, 337
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	250
AspA2I	CCTAGG	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	30, 62
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	89
BclI	TGATCA	2 cut(s)	258, 291
BfaI	CTAG	3 cut(s)	66, 116, 324
BisI	GCNGC	1 cut(s)	78
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	30, 62
BmiI	GGNNCC	3 cut(s)	31, 195, 301
BplI	GAGNNNNNCTC	4 cut(s)	124, 156, 326, 358
BpmI	CTGGAG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	65, 330
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	65, 330
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	165, 354
BseRI	GAGGAG	2 cut(s)	132, 191
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	157, 188, 258, 291, 304
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	2 cut(s)	166, 355
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	31, 195, 301
BspPI	GGATC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	65, 330
BssMI	GATC	5 cut(s)	157, 188, 258, 291, 304
BssT1I	CCWWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	174, 363
BstDSI	CCRYGG	1 cut(s)	330
BstKTI	GATC	5 cut(s)	160, 191, 261, 294, 307
BstMBI	GATC	5 cut(s)	157, 188, 258, 291, 304
BstV1I	GCAGC	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	30, 62
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	227, 256, 310, 316
CviJI	RGCY	5 cut(s)	64, 84, 94, 215, 337
CviKI_1	RGCY	5 cut(s)	64, 84, 94, 215, 337
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	174, 363
DpnI	GATC	5 cut(s)	159, 190, 260, 293, 306
DpnII	GATC	5 cut(s)	157, 188, 258, 291, 304
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	230, 259, 313, 319
FaiI	YATR	9 cut(s)	15, 21, 148, 164, 186, 228, 257, 311, 317
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	4 cut(s)	226, 255, 309, 315
FbaI	TGATCA	2 cut(s)	258, 291
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	3 cut(s)	66, 116, 324
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	230, 259, 313, 319
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	10, 198
Hpy188III	TCNNGA	5 cut(s)	221, 256, 262, 324, 352
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	44, 230, 247
HpyF3I	CTNAG	2 cut(s)	174, 363
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	230, 259, 313, 319
Ksp22I	TGATCA	2 cut(s)	258, 291
Kzo9I	GATC	5 cut(s)	157, 188, 258, 291, 304
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	4 cut(s)	89, 104, 201, 365
Lsp1109I	GCAGC	1 cut(s)	89
MaeI	CTAG	3 cut(s)	66, 116, 324
MaeII	ACGT	1 cut(s)	243
MalI	GATC	5 cut(s)	159, 190, 260, 293, 306
MboI	GATC	5 cut(s)	157, 188, 258, 291, 304
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	2 cut(s)	37, 250
MnlI	CCTC	4 cut(s)	58, 153, 169, 359
MseI	TTAA	2 cut(s)	110, 376
MslI	CAYNNNNRTG	1 cut(s)	314
NdeII	GATC	5 cut(s)	157, 188, 258, 291, 304
NlaIII	CATG	4 cut(s)	230, 259, 313, 319
NlaIV	GGNNCC	3 cut(s)	31, 195, 301
PagI	TCATGA	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	31, 195, 301
PspPI	GGNCC	2 cut(s)	30, 62
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	110, 376
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	157, 188, 258, 291, 304
Sau96I	GGNCC	2 cut(s)	30, 62
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	6 cut(s)	50, 86, 96, 246, 339, 351
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	37, 250
SspI	AATATT	2 cut(s)	204, 371
SspMI	CTAG	3 cut(s)	66, 116, 324
SstI	GAGCTC	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	246
TasI	AATT	2 cut(s)	37, 250
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	110, 376
Tru9I	TTAA	2 cut(s)	110, 376
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	196, 244, 294
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	323
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	3 cut(s)	66, 116, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.