Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009981

Physical Location & Seq

Genomic Coordinates Reverse (-)

2676021 .. 2676713

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08315.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCTGGTTTGAAAGTTTTTTCCTTTGCTTTGCTCCTTATTCTCACTTTCTCACTTATTGATGTTGAAGGATATAATGTAGAGAATGGTGGTTCCTTGTGTTGTAATAACCACCCGAAATTTGGAAAGTGCAACACAAAAAATGACGACCAGAGATGTAACAGTTGGTGTCTCAATGGATGCGACAATGGAAAAGGCGGTTACTGCAAATCTATGTCTCACGGAGGACAATGCCACTGTTATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Defensin_like

Protein Analysis

82

Amino Acids

8.94

Weight (kDa)

7.5

Isoelectric Point (pI)

17.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Defensin_like	PF10868	33 - 82	1.8e-20	Cysteine-rich antifungal protein 2, defensin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33607 AT4G14272 AT4G14276 AT4G18823 AT5G08055 AT5G08315 AT5G16453 AT5G19315 AT5G39645 AT5G52605
fragaria_vesca	FvH4_1g19000 FvH4_1g19000
malus_domestica	MD15G1119700.v1.1
prunus_persica	Prupe.6G205300_v2.0.a1 Prupe.6G206000_v2.0.a1 Prupe.6G206400_v2.0.a1 Prupe.6G209700_v2.0.a1 Prupe.6G209800_v2.0.a1
rosa_rugosa	Rorug02G0165200
rosa_samantha	Rh2AG216900 Rh2BG226800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	13, 68
Alw26I	GTCTC	2 cut(s)	176, 222
ApoI	RAATTY	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	176, 222
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	176, 222
BspACI	CCGC	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	164, 239
BstF5I	GGATG	1 cut(s)	185
BstMAI	GTCTC	2 cut(s)	176, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	235
CspCI	CAANNNNNGTGG	1 cut(s)	224
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
FaiI	YATR	2 cut(s)	75, 215
FokI	GGATG	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	164, 239
HpyCH4V	TGCA	2 cut(s)	132, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	1 cut(s)	164
LweI	GCATC	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	158, 200
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	170
SgeI	CNNG	5 cut(s)	18, 109, 127, 163, 233
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	164, 239
TasI	AATT	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	247
Tru9I	TTAA	1 cut(s)	247
TscAI	CASTG	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.