AT5G19315

Cysteine-rich antifungal protein 2, defensin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009981
Physical Location & Seq
Forward (+)
6504531 .. 6504914
384 bp
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UTR
Exon/CDS
Intron
AT5G19315.1

Sequence Viewer

Length: 243 bp
ATGACCACCACCATGAAAATAATGTCTTTTGCTATGCTACTTGTTCTTTTGTTCTCTATTGATGTCGTTGAAGGATCCGGAAGTTCGTTGTGCTGTAACACACATGCGAAATTTGGAGCTTGCAACACATACCAAGACAGAAAGAGATGCAACAAATGGTGTCTTGATGGATGTGATAATAAGAAAGGCGGTTTTTGCAAACGTTTTGCTGGTGGAGCAAAAAAATGCCATTGTTACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Defensin_like

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

9.0

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Defensin_like PF10868 30 - 80 1.7e-17 Cysteine-rich antifungal protein 2, defensin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 1 cut(s) 189
AclI AACGTT 1 cut(s) 202
AclWI GGATC 2 cut(s) 69, 82
AcsI RAATTY 1 cut(s) 110
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 2 cut(s) 69, 82
Aor13HI TCCGGA 1 cut(s) 77
ApoI RAATTY 1 cut(s) 110
BamHI GGATCC 1 cut(s) 74
BccI CCATC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 77
BseGI GGATG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 1 cut(s) 74
BspACI CCGC 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 69, 82
BssMI GATC 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 195, 215
BstNSI RCATGY 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 121
CviAII CATG 2 cut(s) 13, 104
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
FaeI CATG 2 cut(s) 16, 107
FaiI YATR 4 cut(s) 14, 35, 105, 130
FatI CATG 2 cut(s) 12, 103
FokI GGATG 1 cut(s) 183
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 16, 107
HpaII CCGG 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 78, 164
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 123, 150, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 215
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 2 cut(s) 16, 107
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 2 cut(s) 116, 215
LpnPI CCDG 2 cut(s) 91, 195
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 95, 233
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MflI RGATCY 1 cut(s) 74
MluCI AATT 1 cut(s) 110
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 195, 215
NdeII GATC 1 cut(s) 74
NlaIII CATG 2 cut(s) 16, 107
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 241
Sau3AI GATC 1 cut(s) 74
SetI ASST 2 cut(s) 121, 205
SfaNI GCATC 1 cut(s) 137
SgeI CNNG 8 cut(s) 25, 53, 90, 116, 132, 146, 176, 222
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 205
TasI AATT 1 cut(s) 110
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.