AT5G16453

Cysteine-rich antifungal protein 2, defensin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009981
Physical Location & Seq
Reverse (-)
5375455 .. 5375999
545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16453.1

Sequence Viewer

Length: 267 bp
ATGGCCTCCTCAAAATTCGTTCTTTTTGCTATCCTAGCTCTGTCTCTTCTACTTTCCGGTACCGAAGCAAGAAAGACCGTGTGGCCTAGCAGCGAATTAGACCCAAAGTGTTGCAGCAATCAGCCAGAATTTGGTATATGTGATTCAAAAGAAGATGATGAAAGATGCGCCCAGATGTGTCTGGATGGTTGTCCCACTAACAAAGGTGGTGGCTGCCAACCTATTACTGAAGCCCCTGGTGCTGTTTGTTCTTGTTACTGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Defensin_like

Protein Analysis

88

Amino Acids

9.3

Weight (kDa)

4.54

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Defensin_like PF10868 36 - 87 1.7e-14 Cysteine-rich antifungal protein 2, defensin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 131
AcsI RAATTY 2 cut(s) 14, 128
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 48
AoxI GGCC 2 cut(s) 3, 83
ApeKI GCWGC 3 cut(s) 90, 114, 213
ApoI RAATTY 2 cut(s) 14, 128
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 2 cut(s) 170, 263
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 102, 126, 200
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 35, 87
BisI GCNGC 3 cut(s) 91, 115, 214
BlsI GCNGC 3 cut(s) 92, 116, 215
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 131
BseXI GCAGC 3 cut(s) 102, 126, 200
BshFI GGCC 2 cut(s) 5, 85
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 2 cut(s) 5, 85
BspANI GGCC 2 cut(s) 5, 85
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 2 cut(s) 170, 263
BstMAI GTCTC 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 35, 239
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 102, 126, 200
BsuRI GGCC 2 cut(s) 5, 85
BtsCI GGATG 1 cut(s) 190
CfoI GCGC 2 cut(s) 170, 263
Csp6I GTAC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviJI RGCY 6 cut(s) 5, 38, 85, 124, 213, 233
CviKI_1 RGCY 6 cut(s) 5, 38, 85, 124, 213, 233
CviQI GTAC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 235
FaiI YATR 2 cut(s) 137, 139
FaqI GGGAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 91, 115, 214
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 91, 115, 214
FspBI CTAG 2 cut(s) 35, 87
GlaI GCGC 2 cut(s) 169, 262
GluI GCNGC 3 cut(s) 91, 115, 214
HaeIII GGCC 2 cut(s) 5, 85
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 170, 263
Hin6I GCGC 2 cut(s) 168, 261
HinP1I GCGC 2 cut(s) 168, 261
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 239
HspAI GCGC 2 cut(s) 168, 261
KpnI GGTACC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 70, 138, 167, 185, 222, 249
Lsp1109I GCAGC 3 cut(s) 102, 126, 200
LweI GCATC 1 cut(s) 155
MaeI CTAG 2 cut(s) 35, 87
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 2 cut(s) 38, 164
MluCI AATT 3 cut(s) 14, 95, 128
MnlI CCTC 2 cut(s) 16, 19
MseI TTAA 1 cut(s) 265
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 35, 239
NlaIV GGNNCC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 3 cut(s) 92, 116, 215
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 3 cut(s) 91, 115, 214
ScrFI CCNGG 1 cut(s) 237
SetI ASST 3 cut(s) 40, 208, 223
SfaNI GCATC 1 cut(s) 155
Sse9I AATT 3 cut(s) 14, 95, 128
SspMI CTAG 2 cut(s) 35, 87
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 79
TasI AATT 3 cut(s) 14, 95, 128
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseI GCWGC 3 cut(s) 90, 114, 213
TspDTI ATGAA 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 131
XapI RAATTY 2 cut(s) 14, 128
XspI CTAG 2 cut(s) 35, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.