AT4G14276

Defensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009981
Physical Location & Seq
Forward (+)
8220756 .. 8221277
522 bp
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UTR
Exon/CDS
Intron
AT4G14276.1

Sequence Viewer

Length: 285 bp
ATGGTTAGAACAAATGTTGTCTCTTTTGTTTTATTTGCTGCTATAGTGCTATGTATAGGATCCATTCAAATAGATGGACAAAAACACACCGCACCGTGGATACCTGAAGACAATTCGATATGTTGTAAAGAACATCCGAGTGTTGGAAGATGTCTTCCAAACATCGATGATAGTGCTGAGAAGGGTGGGAAATGCTGGAAGTTTTGTATTGAAGGGTGTGAAACAGGAGGTTTTTGCAAACTTTTTGGACATAAACATATATGTCATTGCAATTGTTCCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Defensin_like

Protein Analysis

94

Amino Acids

10.24

Weight (kDa)

6.91

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Defensin_like PF10868 40 - 92 2.4e-15 Cysteine-rich antifungal protein 2, defensin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 2 cut(s) 54, 67
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 96, 143
AgsI TTSAA 2 cut(s) 68, 212
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 54, 67
ApeKI GCWGC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 114, 146
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciVI GTATCC 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 114, 146
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 143
Bse3DI GCAATG 1 cut(s) 265
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 96, 143
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 96, 143
BsmAI GTCTC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 54, 67
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 114, 146
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 165
BsuI GTATCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 165
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 126
FaiI YATR 8 cut(s) 44, 52, 56, 121, 252, 258, 260, 262
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HapII CCGG 1 cut(s) 279
HpaII CCGG 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 175, 206
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 237, 270
HpyF3I CTNAG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 117, 181, 210
Lsp1109I GCAGC 1 cut(s) 25
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 3 cut(s) 119, 146, 159
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 1 cut(s) 59
MluCI AATT 2 cut(s) 112, 271
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 1 cut(s) 221
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 271
NdeII GATC 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 59
SetI ASST 2 cut(s) 106, 232
SfcI CTRYAG 1 cut(s) 42
SgeI CNNG 5 cut(s) 108, 116, 150, 208, 237
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 2 cut(s) 112, 271
SsiI CCGC 1 cut(s) 90
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 116, 165
TasI AATT 2 cut(s) 112, 271
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseI GCWGC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.