Rroxscaffold_2G00133770

Nodulation receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
71226513 .. 71231764
5252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133770.1

Sequence Viewer

Length: 1491 bp
ATGGGTAATGGGTCAAATTACAGGGAGCTTGCTTTGAATGTGACAGCAAATGGGTATCTGAATCTGACTCTGGTTAGGGCCTCTGAGTCTGACAATGGACCCATTTGCAATGCCTATGAGATTTTGCAGGTGCACCAGTTGGTTCAGGAGACTGACACAGATGACGTGGAAGTGATTTTGGAGGTGAGGAGTGAGTTGCTGGAGAAAAATCAGATGAATGAAGTTTGGGAAGGGTGGACTGCAGACCCATGTCTTCCTGTTCCCTGGAATGGTATAGGTTGTGAAACTGTTAATGGTGTTACTGTCATTACCAAACTGGATCTTTCTTCTGGCATTCAGAGAGGGTCTGATGAAGAACGCAAACTTATAGGACCATTACCTAAAAGCATCACTAAGCTGACTCACCTAAAATTCCTGAACCTCAGCAACAATGGGTTTACTGGCCAAATTCCAGAATTTCTTGAACGTCCCATGTTGATTTCAGTGGATCTGAGCCATAATAATCTTTCGGGGCCACTTCCAAATTCTCTTGCCTCACAACCAAATTTGGAAACACTATGTGCAGACTCTGAACAAAGTTATCCTGAAATTGCAGATTTAATTTTCTCATTACCTAGCATGGATGATCTGATGATGAAATCAATAGCAATAGAGACATTTACTCTTGAGTACCTAGAGGCTGTCACCCAAAGTTACAAAACGCTGATAGGTGAAGGAGGTTTTGGGTCTGTTTACAGTGGCACTCTAACTGATGGTCAGGAAGTGGCAGTGAAGGTTCGATCAGCAACATCAACCCAAGGGACTCGGGAATTTGATAATGAGCTAAATCTTCTGTCAACTATTCGGCATGAGAACCTTGTGCCTCTTCTTGGTTTTTGTAACGAAAAGGACCAAGAAATTCTTGTTTATCCATTTATGTCCAATGGCTCTCTGCAAGATCGCCTATATGGTACTGCTCATGGAAGCAGCAAAAAGAAAAATTCTGGACTGGCCAACAAGACTATCAATTGCTCTTGGTGCTGCTCGAGGTACTACACAACCCATCACTTATCAGCAAAAAGTGATGTGTTTAGCTTTGGCGTGGTTCTACTTGAAATTGTTACTGGTCGGGAACCTCTGAACATACACAGGCCACGTCCCGAGTGGAGCTTAGTCGAATGGGCGAAACCCTATATAAGAGAGTCAAAGATTGATGAAATTGTGGATCCAAACATAAAAGGAGCATACCATGCAGAAGCTATGTGGAGGGTGGTGGAGGTAGCATTGTCATGTATTGAGCCCTTCTCTGCTTACCGACCAGGCATGGCTGACATTGTTCGCGAGCTAGAGGATTCTCTGATAATAGAGAACAATGCATCAGAATACATGAGATCCATAGAAAGTACTGGATCTAATCGCTTTTCCATAATCATGGACAGAAGGATACCGCCACCTACTCCTTCGGAACCCTCAACTATTTTGACAGAAATGGCCCCTCCAGAGCCAAGATAG

Protein Analysis

496

Amino Acids

55.18

Weight (kDa)

4.79

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 233 - 318 1.7e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 233 - 319 3.8e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 329 - 442 1.7e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 118
AccII CGCG 1 cut(s) 1320
AciI CCGC 1 cut(s) 1427
AclWI GGATC 6 cut(s) 327, 495, 1199, 1212, 1365, 1396
AcoI YGGCCR 2 cut(s) 442, 990
AcsI RAATTY 8 cut(s) 410, 447, 455, 523, 544, 809, 897, 979
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 4 cut(s) 671, 952, 1031, 1384
AfiI CCNNNNNNNGG 2 cut(s) 269, 869
AgsI TTSAA 3 cut(s) 37, 464, 1094
AjiI CACGTC 2 cut(s) 166, 1136
AjnI CCWGG 2 cut(s) 263, 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 7 cut(s) 28, 397, 823, 1074, 1149, 1238, 1324
AluI AGCT 7 cut(s) 28, 397, 823, 1074, 1149, 1238, 1324
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 143, 647
Alw44I GTGCAC 1 cut(s) 131
AlwI GGATC 6 cut(s) 327, 495, 1199, 1212, 1365, 1396
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 3 cut(s) 804, 1024, 1139
AoxI GGCC 6 cut(s) 78, 442, 512, 990, 1130, 1470
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 966, 1020
ApoI RAATTY 8 cut(s) 410, 447, 455, 523, 544, 809, 897, 979
AspS9I GGNCC 6 cut(s) 78, 98, 371, 512, 889, 1471
AsuHPI GGTGA 4 cut(s) 196, 395, 676, 722
AvaI CYCGRG 3 cut(s) 804, 1024, 1139
AvaII GGWCC 3 cut(s) 98, 371, 889
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 2 cut(s) 444, 992
BamHI GGATCC 1 cut(s) 1204
BanII GRGCYC 1 cut(s) 1281
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 978, 1007
BccI CCATC 2 cut(s) 746, 1050
BciT130I CCWGG 2 cut(s) 265, 1299
BciVI GTATCC 1 cut(s) 1416
BcoDI GTCTC 2 cut(s) 143, 647
BfaI CTAG 3 cut(s) 615, 674, 1325
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 118
BfuI GTATCC 1 cut(s) 1416
BisI GCNGC 2 cut(s) 967, 1021
BlsI GCNGC 2 cut(s) 968, 1022
BmcAI AGTACT 1 cut(s) 1384
Bme1390I CCNGG 2 cut(s) 265, 1299
Bme18I GGWCC 3 cut(s) 98, 371, 889
BmeT110I CYCGRG 3 cut(s) 804, 1024, 1139
BmgBI CACGTC 2 cut(s) 166, 1136
BmgT120I GGNCC 6 cut(s) 78, 98, 371, 512, 889, 1471
BmiI GGNNCC 6 cut(s) 100, 513, 1113, 1206, 1446, 1473
BmrFI CCNGG 2 cut(s) 265, 1299
BmsI GCATC 2 cut(s) 396, 1364
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 1268, 1300
BpmI CTGGAG 2 cut(s) 221, 1461
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 263, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 869
Bse1I ACTGG 6 cut(s) 136, 321, 445, 993, 1108, 1390
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 265, 1299
BseDI CCNNGG 2 cut(s) 263, 796
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 2 cut(s) 269, 869
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 75, 436, 482
BseNI ACTGG 6 cut(s) 136, 321, 445, 993, 1108, 1390
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 978, 1007
BsgI GTGCAG 1 cut(s) 582
Bsh1236I CGCG 1 cut(s) 1320
BshFI GGCC 6 cut(s) 80, 444, 514, 992, 1132, 1472
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 3 cut(s) 804, 1024, 1139
BslFI GGGAC 3 cut(s) 453, 814, 1122
BslI CCNNNNNNNGG 2 cut(s) 269, 869
BsmAI GTCTC 2 cut(s) 143, 647
BsmFI GGGAC 3 cut(s) 453, 814, 1122
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 6 cut(s) 80, 444, 514, 992, 1132, 1472
BsoBI CYCGRG 3 cut(s) 804, 1024, 1139
Bsp1286I GDGCHC 2 cut(s) 135, 1281
Bsp143I GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
Bsp68I TCGCGA 1 cut(s) 1320
BspACI CCGC 1 cut(s) 1427
BspANI GGCC 6 cut(s) 80, 444, 514, 992, 1132, 1472
BspCNI CTCAG 3 cut(s) 76, 435, 483
BspFNI CGCG 1 cut(s) 1320
BspLI GGNNCC 6 cut(s) 100, 513, 1113, 1206, 1446, 1473
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 6 cut(s) 327, 495, 1199, 1212, 1365, 1396
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 6 cut(s) 136, 321, 445, 993, 1108, 1390
BssECI CCNNGG 2 cut(s) 263, 796
BssMI GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 2 cut(s) 265, 1299
Bst4CI ACNGT 3 cut(s) 289, 304, 737
Bst6I CTCTTC 1 cut(s) 870
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstC8I GCNNGC 2 cut(s) 30, 1322
BstDEI CTNAG 5 cut(s) 84, 393, 422, 491, 1150
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 1320
BstKTI GATC 8 cut(s) 322, 490, 628, 782, 940, 1207, 1373, 1391
BstMAI GTCTC 2 cut(s) 143, 647
BstMBI GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
BstMWI GCNNNNNNNGC 2 cut(s) 1017, 1229
BstNI CCWGG 2 cut(s) 265, 1299
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 263, 1297
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 1320
BstV1I GCAGC 2 cut(s) 978, 1007
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 5 cut(s) 319, 487, 1204, 1370, 1388
BstXI CCANNNNNNTGG 1 cut(s) 1411
BstYI RGATCY 5 cut(s) 319, 487, 1204, 1370, 1388
BsuI GTATCC 1 cut(s) 1416
BsuRI GGCC 6 cut(s) 80, 444, 514, 992, 1132, 1472
BtrI CACGTC 2 cut(s) 166, 1136
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 3 cut(s) 489, 742, 774
BtuMI TCGCGA 1 cut(s) 1320
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 30, 1322
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 6 cut(s) 78, 98, 371, 512, 889, 1471
Csp6I GTAC 4 cut(s) 670, 951, 1030, 1383
CviQI GTAC 4 cut(s) 670, 951, 1030, 1383
DdeI CTNAG 5 cut(s) 84, 393, 422, 491, 1150
DpnI GATC 8 cut(s) 321, 489, 627, 781, 939, 1206, 1372, 1390
DpnII GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
DraIII CACNNNGTG 1 cut(s) 560
EaeI YGGCCR 2 cut(s) 442, 990
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco130I CCWWGG 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 1281
Eco47I GGWCC 3 cut(s) 98, 371, 889
Eco88I CYCGRG 3 cut(s) 804, 1024, 1139
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 263, 1297
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 1 cut(s) 1357
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 1 cut(s) 796
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 3 cut(s) 453, 814, 1122
Fnu4HI GCNGC 2 cut(s) 967, 1021
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 2 cut(s) 967, 1021
FspBI CTAG 3 cut(s) 615, 674, 1325
GluI GCNGC 2 cut(s) 967, 1021
GsuI CTGGAG 2 cut(s) 221, 1461
HaeIII GGCC 6 cut(s) 80, 444, 514, 992, 1132, 1472
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 8 cut(s) 61, 67, 86, 400, 566, 802, 1181, 1331
HphI GGTGA 4 cut(s) 196, 395, 676, 722
Hpy166II GTNNAC 5 cut(s) 133, 237, 438, 733, 837
Hpy8I GTNNAC 5 cut(s) 133, 237, 438, 733, 837
HpyAV CCTTC 6 cut(s) 224, 707, 766, 1291, 1413, 1449
HpyCH4III ACNGT 3 cut(s) 289, 304, 737
HpyCH4IV ACGT 3 cut(s) 165, 466, 1135
HpyCH4V TGCA 9 cut(s) 108, 127, 133, 242, 563, 593, 934, 1232, 1355
HpyF10VI GCNNNNNNNGC 2 cut(s) 1017, 1229
HpyF3I CTNAG 5 cut(s) 84, 393, 422, 491, 1150
HpySE526I ACGT 3 cut(s) 165, 466, 1135
Kzo9I GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
LmnI GCTCC 3 cut(s) 25, 1146, 1220
Lsp1109I GCAGC 2 cut(s) 978, 1007
LweI GCATC 2 cut(s) 396, 1364
MaeI CTAG 3 cut(s) 615, 674, 1325
MaeII ACGT 3 cut(s) 165, 466, 1135
MaeIII GTNAC 6 cut(s) 40, 298, 682, 692, 878, 1099
MalI GATC 8 cut(s) 321, 489, 627, 781, 939, 1206, 1372, 1390
MboI GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
MboII GAAGA 5 cut(s) 245, 318, 365, 821, 857
MfeI CAATTG 1 cut(s) 1006
MflI RGATCY 5 cut(s) 319, 487, 1204, 1370, 1388
MhlI GDGCHC 2 cut(s) 135, 1281
MlsI TGGCCA 2 cut(s) 444, 992
MluNI TGGCCA 2 cut(s) 444, 992
MlyI GAGTC 6 cut(s) 61, 95, 394, 560, 796, 1190
Mox20I TGGCCA 2 cut(s) 444, 992
Mph1103I ATGCAT 1 cut(s) 1357
MscI TGGCCA 2 cut(s) 444, 992
MseI TTAA 2 cut(s) 291, 599
MslI CAYNNNNRTG 2 cut(s) 1267, 1409
Msp20I TGGCCA 2 cut(s) 444, 992
MspR9I CCNGG 2 cut(s) 265, 1299
MunI CAATTG 1 cut(s) 1006
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 2 cut(s) 265, 1299
MvnI CGCG 1 cut(s) 1320
MwoI GCNNNNNNNGC 2 cut(s) 1017, 1229
NdeII GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
NlaIV GGNNCC 6 cut(s) 100, 513, 1113, 1206, 1446, 1473
NmuCI GTSAC 2 cut(s) 40, 682
NruI TCGCGA 1 cut(s) 1320
NsiI ATGCAT 1 cut(s) 1357
PaeR7I CTCGAG 1 cut(s) 1024
PaqCI CACCTGC 1 cut(s) 118
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 61, 1331
PkrI GCNGC 2 cut(s) 968, 1022
PleI GAGTC 6 cut(s) 61, 94, 394, 560, 796, 1189
PpsI GAGTC 6 cut(s) 61, 94, 394, 560, 796, 1189
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 263, 1297
PspGI CCWGG 2 cut(s) 263, 1297
PspN4I GGNNCC 6 cut(s) 100, 513, 1113, 1206, 1446, 1473
PspPI GGNCC 6 cut(s) 78, 98, 371, 512, 889, 1471
PspXI VCTCGAGB 1 cut(s) 1024
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 5 cut(s) 319, 487, 1204, 1370, 1388
RruI TCGCGA 1 cut(s) 1320
RsaI GTAC 4 cut(s) 671, 952, 1031, 1384
RsaNI GTAC 4 cut(s) 670, 951, 1030, 1383
RseI CAYNNNNRTG 2 cut(s) 1267, 1409
SaqAI TTAA 2 cut(s) 291, 599
SatI GCNGC 2 cut(s) 967, 1021
Sau3AI GATC 8 cut(s) 319, 487, 625, 779, 937, 1204, 1370, 1388
Sau96I GGNCC 6 cut(s) 78, 98, 371, 512, 889, 1471
ScaI AGTACT 1 cut(s) 1384
SchI GAGTC 6 cut(s) 61, 95, 394, 560, 796, 1190
ScrFI CCNGG 2 cut(s) 265, 1299
SduI GDGCHC 2 cut(s) 135, 1281
SfaNI GCATC 2 cut(s) 396, 1364
SfcI CTRYAG 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 1024
SinI GGWCC 3 cut(s) 98, 371, 889
SlaI CTCGAG 1 cut(s) 1024
SmiMI CAYNNNNRTG 2 cut(s) 1267, 1409
SmlI CTYRAG 2 cut(s) 665, 1024
SmoI CTYRAG 2 cut(s) 665, 1024
SsiI CCGC 1 cut(s) 1427
SspMI CTAG 3 cut(s) 615, 674, 1325
StyD4I CCNGG 2 cut(s) 263, 1297
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 3 cut(s) 289, 304, 737
TaiI ACGT 3 cut(s) 168, 469, 1138
TaqI TCGA 3 cut(s) 778, 1025, 1155
TatI WGTACW 1 cut(s) 1382
TfiI GAWTC 2 cut(s) 61, 1331
Tru1I TTAA 2 cut(s) 291, 599
Tru9I TTAA 2 cut(s) 291, 599
TscAI CASTG 3 cut(s) 489, 742, 774
TseFI GTSAC 2 cut(s) 40, 682
TseI GCWGC 2 cut(s) 966, 1020
Tsp45I GTSAC 2 cut(s) 40, 682
TspDTI ATGAA 5 cut(s) 230, 234, 366, 650, 1209
TspRI CASTG 3 cut(s) 489, 742, 774
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 3 cut(s) 98, 371, 889
XapI RAATTY 8 cut(s) 410, 447, 455, 523, 544, 809, 897, 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 1140
XhoI CTCGAG 1 cut(s) 1024
XspI CTAG 3 cut(s) 615, 674, 1325
ZrmI AGTACT 1 cut(s) 1384
Zsp2I ATGCAT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.