RchiOBHm_Chr2g0121881

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001060
Physical Location & Seq
Forward (+)
34755020 .. 34755767
748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49432

Sequence Viewer

Length: 315 bp
ATGATGGTCACAACAAATATATATAATCTCATTCTCAGTAAACTTTATTGTGACCACCATGGTACAATGCACATACGGGGTAATCGTGAGTATTCATGCAAACTGAAGTTCAAAGAGCAATCCATTCTTGACCGAAATCCTCACCAGAAGCTCCCACCCACGGATTCCAGACTCAGGCCAGACCAGCGGCACCTGGAGAATGGAGAATATGAAAAGGCGAATGCAGAGAAGAAGCGGTTGGAAAGAAGGCAAAGAATGGTACGTATGGTATCTTTGATATCTCTGGGATACACACACACACACACACCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

104

Amino Acids

12.4

Weight (kDa)

9.82

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 2 - 45 3.9e-06 Oxysterol-binding protein
Oxysterol_BP PF01237 47 - 88 2e-15 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 235
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 64, 261
AfiI CCNNNNNNNGG 2 cut(s) 160, 174
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AoxI GGCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 194
BciVI GTATCC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 58, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 174
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 58, 159
BseLI CCNNNNNNNGG 2 cut(s) 160, 174
BseMII CTCAG 2 cut(s) 49, 187
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 160, 174
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 187, 235
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 48, 186
BspLI GGNNCC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 58, 159
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 35, 173
BstDSI CCRYGG 2 cut(s) 58, 159
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 263
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 2 cut(s) 58, 159
Csp6I GTAC 2 cut(s) 63, 260
CviAII CATG 2 cut(s) 59, 96
CviJI RGCY 2 cut(s) 151, 178
CviKI_1 RGCY 2 cut(s) 151, 178
CviQI GTAC 2 cut(s) 63, 260
DdeI CTNAG 2 cut(s) 35, 173
Eco105I TACGTA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 58
Eco32I GATATC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 62, 99
FaiI YATR 8 cut(s) 20, 22, 24, 60, 74, 97, 210, 266
FatI CATG 2 cut(s) 58, 95
Fnu4HI GCNGC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 2 cut(s) 62, 99
HinfI GANTC 2 cut(s) 164, 171
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 86, 128, 168
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 70, 99, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 35, 173
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 62, 99
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 158, 160, 179, 181, 192, 197, 206, 269
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 7, 50
MboII GAAGA 1 cut(s) 241
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 184
NcoI CCATGG 1 cut(s) 58
NlaIII CATG 2 cut(s) 62, 99
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 7, 50
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 191
RsaI GTAC 2 cut(s) 64, 261
RsaNI GTAC 2 cut(s) 63, 260
SatI GCNGC 1 cut(s) 188
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 194
SetI ASST 4 cut(s) 153, 195, 265, 314
SnaBI TACGTA 1 cut(s) 263
SsiI CCGC 2 cut(s) 187, 235
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 265
TaqII GACCGA 1 cut(s) 147
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 164
TseFI GTSAC 2 cut(s) 7, 50
Tsp45I GTSAC 2 cut(s) 7, 50
TspDTI ATGAA 2 cut(s) 84, 225
TspGWI ACGGA 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.