Rorug07G0072900

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001060
Physical Location & Seq
Reverse (-)
5616019 .. 5616587
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0072900.1

Sequence Viewer

Length: 444 bp
ATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGCCTATGGCTGATGATGAAATGTGCACTCTTAATGTTCCGGCATTGCAGACTGATGGTCTGATTTTTCTTTGGGTCACTGGACGTGTGATGGAGCTTGGACGTGAATGTTTAGAACTTTGGGGATGCAAGCGTATTGAGGAGATGATTTGGGTGAAAACTAATCAACTTCAACGAATAATTAGAACTGGGCGCACTGGCCACTGGCTAAATCATAGCAAGGAGTATTGCCTCGTTGGAATAAAAGGGGATCCATTGGTAAATAGGAATATTGATGCTGATGTAATTGTTGCTGAGGTCAGAGAGACAGACCGTAAGCCAGGCGAGATTAGTGTAATTAATATGAATCCTATAATTAGTCCATTTAAATATCTGTTCATTATACTTTTCCTGATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

147

Amino Acids

17.0

Weight (kDa)

5.37

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MT-A70 PF05063 1 - 127 4.8e-42 MT-A70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclWI GGATC 3 cut(s) 2, 287, 300
AcoI YGGCCR 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 215
AhdI GACNNNNNGTC 1 cut(s) 99
AjiI CACGTC 2 cut(s) 128, 146
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 67
AlwI GGATC 3 cut(s) 2, 287, 300
AoxI GGCC 2 cut(s) 44, 241
ApaLI GTGCAC 1 cut(s) 67
AseI ATTAAT 1 cut(s) 381
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 243
BamHI GGATCC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 92, 127
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgBI CACGTC 2 cut(s) 128, 146
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 158, 307
BmuI ACTGGG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 14
Bse1I ACTGG 4 cut(s) 127, 235, 244, 251
Bse3DI GCAATG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 4 cut(s) 127, 235, 244, 251
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 71
BshFI GGCC 2 cut(s) 46, 243
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 2 cut(s) 46, 243
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 7, 292
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 46, 243
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 3 cut(s) 2, 287, 300
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 4 cut(s) 127, 235, 244, 251
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 7, 292
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 10, 295
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 2 cut(s) 7, 292
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 2 cut(s) 46, 243
BtgI CCRYGG 1 cut(s) 14
BtrI CACGTC 2 cut(s) 128, 146
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 3 cut(s) 120, 237, 244
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 1 cut(s) 15
CviJI RGCY 7 cut(s) 5, 46, 53, 139, 243, 250, 361
CviKI_1 RGCY 7 cut(s) 5, 46, 53, 139, 243, 250, 361
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 9, 294
DpnII GATC 2 cut(s) 7, 292
DraI TTTAAA 1 cut(s) 409
DriI GACNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 18
FaiI YATR 9 cut(s) 16, 27, 29, 42, 50, 258, 386, 395, 425
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 14
FauNDI CATATG 1 cut(s) 27
FokI GGATG 1 cut(s) 180
GlaI GCGC 1 cut(s) 236
HaeIII GGCC 2 cut(s) 46, 243
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 237
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 105, 344
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 2 cut(s) 127, 145
HpyCH4V TGCA 3 cut(s) 69, 91, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 2 cut(s) 127, 145
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 7, 292
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 96, 108, 216, 225, 232, 348, 375
LweI GCATC 2 cut(s) 158, 307
MaeII ACGT 2 cut(s) 127, 145
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 9, 294
MboI GATC 2 cut(s) 7, 292
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 5 cut(s) 32, 222, 327, 378, 396
MluNI TGGCCA 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 3 cut(s) 175, 284, 331
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 75, 381, 408
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 27
NdeII GATC 2 cut(s) 7, 292
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 75, 381, 408
Sau3AI GATC 2 cut(s) 7, 292
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 130, 141, 148, 342
SfaNI GCATC 2 cut(s) 158, 307
SmiI ATTTAAAT 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 5 cut(s) 32, 222, 327, 378, 396
SsiI CCGC 1 cut(s) 11
SspI AATATT 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 14
SwaI ATTTAAAT 1 cut(s) 409
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 2 cut(s) 130, 148
TasI AATT 5 cut(s) 32, 222, 327, 378, 396
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 3 cut(s) 75, 381, 408
Tru9I TTAA 3 cut(s) 75, 381, 408
TscAI CASTG 3 cut(s) 127, 244, 251
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 4 cut(s) 14, 75, 401, 409
TspRI CASTG 3 cut(s) 127, 244, 251
VneI GTGCAC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.